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[184959_at]

Description T25D10.2 /REP_DB=WormBase Gene ID /WP=CE02888 /TR=Q22780 /GB=AAC46592.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 23      6grp_total > 12      4grp_total > 45      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 141.3
(3)
P 		109.4
(1.1)
A 		98
(0.4)
A 		41.8
(-3)
A 		100
B 192.7
(3)
P 		128.1
(-0.4)
A 		103.3
(-1.7)
A 		79.4
(-3)
A 		113
C 179.7
(3)
P 		151.2
(0.8)
A 		101.1
(-3)
A 		129.4
(-0.8)
A 		79
avr 171.2
(3) 		129.6
(0.2) 		100.8
(-1.8) 		83.5
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 202.6
(3)
P 		202.2
(3)
P 		153.9
(0.4)
P 		97.7
(-2.5)
A 		144.2
(-0.1)
P 		89
(-3)
A 		114
B 125.5
(-1.2)
P 		173
(3)
P 		131.3
(-0.6)
P 		170.5
(2.8)
P 		124.6
(-1.2)
A 		104.4
(-3)
A 		69
C 184.5
(1.5)
M 		222.6
(3)
P 		152.7
(0.3)
M 		111.5
(-1.3)
P 		75.4
(-2.7)
A 		68
(-3)
P 		155
avr 170.9
(1.5) 		199.3
(3) 		146
(0.1) 		126.6
(-0.9) 		114.7
(-1.5) 		87.1
(-3) 		112
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 51.5
(3)
P 		23.7
(-0.7)
A 		25.6
(-0.4)
A 		6.1
(-3)
A 		45
B 61.5
(3)
P 		31.6
(-1)
A 		23.9
(-2.1)
A 		16.9
(-3)
A 		45
C 59.5
(3)
P 		43.5
(0.5)
A 		35.2
(-0.9)
A 		21.8
(-3)
A 		38
avr 57.5
(3) 		32.9
(-0.5) 		28.2
(-1.1) 		14.9
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 37.3
(-1.1)
P 		71.9
(3)
P 		33.5
(-1.6)
P 		24.8
(-2.6)
A 		43.5
(-0.4)
P 		21.7
(-3)
A 		50
B 43.7
(-0.2)
P 		57.6
(3)
P 		31.9
(-3)
P 		45.2
(0.1)
P 		50.6
(1.4)
A 		38.9
(-1.4)
A 		26
C 68.4
(3)
M 		67.9
(2.9)
P 		38.9
(-0.8)
M 		22.4
(-3)
P 		24.4
(-2.7)
A 		22.8
(-2.9)
P 		46
avr 49.8
(0.5) 		65.8
(3) 		34.8
(-1.9) 		30.8
(-2.5) 		39.5
(-1.2) 		27.8
(-3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184959_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4191
Sequence Type Exemplar sequence
Representative Public ID T25D10.2 NCBI
Target Description T25D10.2 /REP_DB=WormBase Gene ID /WP=CE02888 /TR=Q22780 /GB=AAC46592.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062888
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T25D10.2 ENSEMBL cdna:known chromosome:CEL140:II:6398480:6400749:1 gene:T25D10.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062888 7/11 Cross Hyb Matching Probes None
NM_073813 1/11 Cross Hyb Matching Probes A 
SNAP00000021458 8/11 Cross Hyb Matching Probes None
GENEFINDER00000021468 8/11 Cross Hyb Matching Probes None
C44H9.6.2 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6398476-6401889(+) 100.0 100.0
Public Domain and Genome References
Ensembl T25D10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE59310 Hypothetical protein CBG02647 [Caenorhabditis briggsae] 1.0E-158
blast NP_495289 T25D10.2 [Caenorhabditis elegans] gb|AAC46592.3| Hypothetical protein T25D10.2 [Caenorhabditis elegans] 1.0E-125
blast T16938 hypothetical protein T25D10.2 - Caenorhabditis elegans 4.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 5.3E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.33
Trans Membrane
ID Number Of Domains Domain Boundaries
T25D10.2 1 284-306
Sequence
Target Sequence 
>C. ELEGANS:184959_AT
aaatgggccattttccacactatctggtattgctcttgatcctcatgattgcattatctg
atatgagactgctaaataaacaattcacactttggccccaaaaaaggcgccaaccgagcg
ccaaatgtgccaacacttggaaggtctttggtactacattgtccgattccaaaagcatat
ccgcctccgaaagttacgtggacagtgtttctaaaatgaaaaggaaaaactcgcttccaa
tatcacacatatcgtctgattatgtggcatttcccaatggaacactcatcatatcacact
tctcatatcatcactttggttattttgaatgcaatataaacaattttgctggtcacgctt
ctacgaatacattcattgattctagagaattggtagcgaatctagaatctttaaaaccaa
catttgtgaatggatgctctgcagctcttcgtagctctctctttatgttccttcttggat
gccttatcacatctggccataatagcgtgacactcgttctgcgtacatctggctttattt
ccacgtgtcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGGGCCATTTTCCACACTATCT 297 119 119 Antisense
TATCTGGTATTGCTCTTGATCCTCA 519 659 139 Antisense
CGAGCGCCAAATGTGCCAACACTTG 575 249 233 Antisense
GGTCTTTGGTACTACATTGTCCGAT 491 503 261 Antisense
CATATCCGCCTCCGAAAGTTACGTG 178 197 294 Antisense
GAACACTCATCATATCACACTTCTC 560 351 398 Antisense
CACACTTCTCATATCATCACTTTGG 286 195 413 Antisense
TTTGCTGGTCACGCTTCTACGAATA 223 667 463 Antisense
TGTTCCTTCTTGGATGCCTTATCAC 320 563 584 Antisense
TAATAGCGTGACACTCGTTCTGCGT 445 635 618 Antisense
CATCTGGCTTTATTTCCACGTGTCC 140 213 644 Antisense
Sequence Source Affymetrix Proprietary Database