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[184958_at]

Description K04F1.11 /REP_DB=WormBase Gene ID /WP=CE19962 /TR=Q9TXL5 /GB=AAC78170.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 4
(-3)
A 		4.2
(-2.9)
A 		14.7
(3)
A 		5.6
(-2.1)
A 		11
B 9.5
(-0.3)
A 		2.4
(-3)
A 		18.4
(3)
A 		17.2
(2.6)
A 		16
C 10.6
(-2.1)
A 		4.5
(-3)
A 		7.8
(-2.5)
A 		46.5
(3)
A 		42
avr 8
(-1.7) 		3.7
(-3) 		13.6
(0.1) 		23.1
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 35.3
(3)
A 		5.6
(-2.6)
A 		3.3
(-3)
A 		29
(1.8)
A 		23.8
(0.8)
A 		7.7
(-2.2)
A 		32
B 2.1
(-3)
A 		3.3
(2.1)
A 		2.5
(-1.3)
A 		2.5
(-1.3)
A 		3.2
(1.7)
A 		3.5
(3)
A 		1
C 8.2
(-1)
A 		19.3
(3)
A 		4.1
(-2.5)
A 		17.8
(2.5)
A 		2.8
(-3)
A 		3.7
(-2.7)
A 		17
avr 15.2
(2.5) 		9.4
(-0.2) 		3.3
(-3) 		16.4
(3) 		9.9
(0) 		5
(-2.2) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.5
(-1.6)
A 		0.9
(-2.8)
A 		3.8
(3)
A 		0.8
(-3)
A 		3
B 3
(0.9)
A 		0.6
(-3)
A 		4.3
(3)
A 		3.7
(2)
A 		4
C 3.5
(-1)
A 		1.3
(-3)
A 		2.7
(-1.7)
A 		7.8
(3)
A 		7
avr 2.7
(0.4) 		0.9
(-3) 		3.6
(2.1) 		4.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 6.5
(2.2)
A 		2
(-1.8)
A 		0.7
(-3)
A 		7.4
(3)
A 		7.2
(2.8)
A 		1.9
(-1.9)
A 		7
B 0.7
(-2.1)
A 		1.1
(1.3)
A 		0.6
(-3)
A 		0.7
(-2.1)
A 		1.3
(3)
A 		1.3
(3)
A 		1
C 3
(-0.5)
A 		5.9
(3)
A 		1
(-2.9)
A 		3.6
(0.2)
A 		0.9
(-3)
A 		1.3
(-2.5)
A 		5
avr 3.4
(2) 		3
(1.3) 		0.8
(-3) 		3.9
(3) 		3.1
(1.5) 		1.5
(-1.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184958_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15682
Sequence Type Exemplar sequence
Representative Public ID K04F1.11 NCBI
Target Description K04F1.11 /REP_DB=WormBase Gene ID /WP=CE19962 /TR=Q9TXL5 /GB=AAC78170.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071071
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000011970 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1660126:1665677:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071071 8/11 Cross Hyb Matching Probes None
SNAP00000011963 7/11 Cross Hyb Matching Probes None
K04F1.11 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1660125-1661979(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78169 Hypothetical protein K04F1.10 [Caenorhabditis elegans] ref|NP_503473.1| K04F1.10 [Caenorhabditis elegans] 0.0
blast AAC78170 Hypothetical protein K04F1.11 [Caenorhabditis elegans] ref|NP_503472.2| K04F1.11 [Caenorhabditis elegans] 1.0E-114
blast AAC78166 Hypothetical protein K04F1.7 [Caenorhabditis elegans] ref|NP_503476.1| K04F1.7 [Caenorhabditis elegans] 8.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 6.1E-16
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 9.6E-13
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 3.1E-9
Sequence
Target Sequence 
>C. ELEGANS:184958_AT
aaaacagttaacctcagcattcaaaaatataaaaactttgtacggaaacttgaaagtgta
tcagacaaatttcaagagcggcaagtttctggaaagacttcaaactattgaatgtgacga
agatggtttcttcagctgggagtctaacgaggaattgattgaaattggaatgacaaatct
aaactttacatcctcgaatccaaatgtcacaaagcaagtcgaaatgctcatttacgaaac
gtctccggattgttgcattaccagtgaagaaatttcaaacttcattatcaatgacaactt
gttcatgagttcactccctaccagattctgtccaatcacttcaaaagttatcaatggaga
aaaacgtgttcgcggatctcaggtttacaataataaaaataaatgggcagagattggagc
taaccacgaaaatttaacagagaacctaataaacgagccaaacgataccgtgttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACAGTTAACCTCAGCATTCAAA 533 129 189 Antisense
AAGAGCGGCAAGTTTCTGGAAAGAC 699 153 262 Antisense
TTTCTTCAGCTGGGAGTCTAACGAG 498 669 315 Antisense
ATCTAAACTTTACATCCTCGAATCC 656 1 365 Antisense
TCCTCGAATCCAAATGTCACAAAGC 248 593 379 Antisense
TGCTCATTTACGAAACGTCTCCGGA 11 579 413 Antisense
GTCTCCGGATTGTTGCATTACCAGT 508 469 429 Antisense
TTGTTCATGAGTTCACTCCCTACCA 670 705 487 Antisense
AAAACGTGTTCGCGGATCTCAGGTT 453 131 549 Antisense
GGGCAGAGATTGGAGCTAACCACGA 289 491 593 Antisense
AACGAGCCAAACGATACCGTGTTGT 233 145 640 Antisense
Sequence Source Affymetrix Proprietary Database