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[184957_at] 7TM chemoreceptor, str family

Description Y9C9A.18 /REP_DB=WormBase Gene ID /WP=CE25652 /TR=Q9N2T8 /GB=AAF60941.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 12      6grp_cgc > 96      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 39
(-0.7)
P 		24.7
(-2)
A 		13.1
(-3)
A 		81.4
(3)
A 		68
B 51.3
(3)
A 		21.5
(-3)
A 		43.6
(1.4)
A 		29.4
(-1.4)
A 		30
C 27.1
(-1.9)
A 		46.4
(-0.5)
A 		12.7
(-3)
A 		94.3
(3)
P 		82
avr 39.1
(-0.9) 		30.9
(-2) 		23.1
(-3) 		68.4
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 33.1
(1.4)
A 		2
(-3)
A 		2.6
(-2.9)
A 		44.2
(3)
A 		18.5
(-0.7)
A 		24.6
(0.2)
A 		42
B 25.2
(-2)
A 		44.2
(1.3)
A 		19.3
(-3)
A 		54.3
(3)
A 		38.5
(0.3)
A 		44.5
(1.3)
A 		35
C 10.3
(-2.1)
A 		4.2
(-3)
A 		20.3
(-0.7)
A 		46.7
(3)
A 		22.9
(-0.4)
A 		18.9
(-0.9)
A 		43
avr 22.9
(-1.5) 		16.8
(-2.5) 		14.1
(-3) 		48.4
(3) 		26.6
(-0.8) 		29.3
(-0.3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.2
(3)
P 		5.4
(-1.9)
A 		3.4
(-3)
A 		11.9
(1.7)
A 		11
B 16.4
(3)
A 		5.3
(-3)
A 		10.1
(-0.4)
A 		6.3
(-2.5)
A 		11
C 9
(-0.6)
A 		13.3
(1.6)
A 		4.4
(-3)
A 		15.9
(3)
P 		12
avr 13.2
(3) 		8
(-1.3) 		6
(-3) 		11.4
(1.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 6.1
(0.1)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		11.2
(3)
A 		5.6
(-0.2)
A 		6
(0.1)
A 		11
B 8.8
(-0.9)
A 		14.7
(2)
A 		4.7
(-3)
A 		14.4
(1.9)
A 		15.6
(2.5)
A 		16.6
(3)
A 		12
C 3.8
(-1.1)
A 		1.3
(-3)
A 		5.2
(-0.1)
A 		9.4
(3)
A 		7.4
(1.5)
A 		6.3
(0.7)
A 		8
avr 6.2
(-1) 		5.6
(-1.5) 		3.5
(-3) 		11.7
(3) 		9.5
(1.4) 		9.6
(1.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184957_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10615
Sequence Type Exemplar sequence
Representative Public ID Y9C9A.18 NCBI
Target Description Y9C9A.18 /REP_DB=WormBase Gene ID /WP=CE25652 /TR=Q9N2T8 /GB=AAF60941.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068270(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068270 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-159) (str-159) mRNA, complete cds. 10/11 None
GENEFINDER00000021412 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4910128:4910952:1 10/11 None
Y9C9A.18 ENSEMBL cdna:known chromosome:CEL140:IV:4909974:4910952:1 gene:Y9C9A.18 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021387 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4909979-4910958(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-159
Ensembl Y9C9A.18
Entrez Gene 189423 Entrez gene
WormBase CE38254 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500671 Seven TM Receptor family member (str-159) [Caenorhabditis elegans] 0.0
blast NP_500671 Seven TM Receptor family member (str-159) [Caenorhabditis elegans] 1.0E-110
blast NP_500671 Seven TM Receptor family member (str-159) [Caenorhabditis elegans] 1.0E-107
blast NP_500668 Seven TM Receptor family member (str-161) [Caenorhabditis elegans] gb|AAB94157.1| Seven tm receptor protein 161 [Caenorhabditis elegans] 1.0E-95
blast AAC48250 Seven tm receptor protein 160 [Caenorhabditis elegans] ref|NP_503493.1| Seven TM Receptor family member (str-160) [Caenorhabditis elegans] 8.0E-88
blast NP_500668 Seven TM Receptor family member (str-161) [Caenorhabditis elegans] gb|AAB94157.1| Seven tm receptor protein 161 [Caenorhabditis elegans] 4.0E-56
blast NP_500668 Seven TM Receptor family member (str-161) [Caenorhabditis elegans] gb|AAB94157.1| Seven tm receptor protein 161 [Caenorhabditis elegans] 1.0E-53
blast AAC48250 Seven tm receptor protein 160 [Caenorhabditis elegans] ref|NP_503493.1| Seven TM Receptor family member (str-160) [Caenorhabditis elegans] 3.0E-49
blast AAC48250 Seven tm receptor protein 160 [Caenorhabditis elegans] ref|NP_503493.1| Seven TM Receptor family member (str-160) [Caenorhabditis elegans] 5.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.0E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.2E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.5E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.5E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500671.2 7 15-32,45-67,91-113,133-155,205-224,252-274,284-306
Y9C9A.18 4 26-48,98-117,145-167,177-199
GENEFINDER00000021412 4 12-34,84-103,131-153,163-185
Sequence
Target Sequence 
>C. ELEGANS:184957_AT
tactggattcctttcagcttgcgtattttggaccacagggcctaatgatcaaataaataa
ctacattagacataatctcaaagaggaatacgatctggatgttgatcaaacatcttacat
tgcatttgtgtactggaaatctgaaaatagagtagattatttgaacatcctggatacgag
taagctcatgatcgtgaacatcattatgataattccgttttcgatcatattttattgtgg
tttgaagagttattatcaaatcaaagagttgatttcaaaaggggaaaatgaattctctcg
gcgtctgcaaatgcaattatacaaagcattagttgctcaaactttcattccaacactttt
cctatttattcctgtgagtttgttccttgttggtccattaattggtatcaatgtcacatg
ggctctccgagcagttacagttttcttttcaatttatttagccactgaatccttgcccat
tatctttttggtagatgattacagaacagccattgcaagtgagtctgatttgaaagtaga
tgcggctaaaaaaatgttttcagatattttccgccgatgtctctcaaaacctcaagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTGGATTCCTTTCAGCTTGCGTA 593 645 120 Antisense
AGCTTGCGTATTTTGGACCACAGGG 278 79 135 Antisense
GATAATTCCGTTTTCGATCATATTT 159 423 327 Antisense
TTCTCTCGGCGTCTGCAAATGCAAT 187 691 412 Antisense
TTCATTCCAACACTTTTCCTATTTA 438 687 463 Antisense
TGAGTTTGTTCCTTGTTGGTCCATT 645 565 494 Antisense
GTATCAATGTCACATGGGCTCTCCG 91 455 524 Antisense
TTTATTTAGCCACTGAATCCTTGCC 608 673 572 Antisense
GAATCCTTGCCCATTATCTTTTTGG 135 331 586 Antisense
TTCAGATATTTTCCGCCGATGTCTC 476 687 678 Antisense
CCGATGTCTCTCAAAACCTCAAGTG 478 263 693 Antisense
Sequence Source Affymetrix Proprietary Database