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[184956_at]

Description Y67A10A.3 /REP_DB=WormBase Gene ID /WP=CE25542 /TR=Q9U1U7 /GB=CAB60453.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 24      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 5.7
(-2.6)
A 		3.1
(-3)
A 		39.7
(3)
A 		5.8
(-2.6)
A 		37
B 6.9
(-0.7)
A 		12.1
(3)
A 		3.6
(-3)
A 		4.6
(-2.3)
A 		9
C 1.5
(-3)
A 		12.8
(-1.6)
A 		3.6
(-2.7)
A 		49.3
(3)
A 		48
avr 4.7
(-3) 		9.3
(-1.2) 		15.6
(1.3) 		19.9
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 10.8
(0.6)
A 		6.9
(-1.8)
A 		7.7
(-1.3)
A 		4.9
(-3)
A 		14.8
(3)
A 		10.4
(0.3)
A 		10
B 2.7
(-3)
A 		5.6
(-2.3)
A 		3
(-2.9)
A 		5.1
(-2.4)
A 		4.2
(-2.6)
A 		26
(3)
A 		23
C 2.6
(-3)
A 		9.5
(3)
A 		5.8
(-0.2)
A 		6.7
(0.6)
A 		4
(-1.8)
A 		3.2
(-2.5)
A 		7
avr 5.4
(-3) 		7.3
(-1.5) 		5.5
(-2.9) 		5.6
(-2.8) 		7.7
(-1.2) 		13.2
(3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.1
(-2.1)
A 		0.7
(-3)
A 		10.4
(3)
A 		0.9
(-2.9)
A 		10
B 2.2
(0.8)
A 		3
(3)
A 		0.8
(-3)
A 		1
(-2.5)
A 		2
C 0.5
(-3)
A 		3.7
(-0.5)
A 		1.3
(-2.4)
A 		8.3
(3)
A 		8
avr 1.6
(-3) 		2.5
(-0.9) 		4.2
(3) 		3.4
(1.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2
(-1.5)
A 		2.5
(-0.6)
A 		1.7
(-2.1)
A 		1.2
(-3)
A 		4.5
(3)
A 		2.5
(-0.6)
A 		3
B 0.9
(-2.9)
A 		1.9
(-2.2)
A 		0.7
(-3)
A 		1.3
(-2.6)
A 		1.7
(-2.3)
A 		9.7
(3)
A 		9
C 1
(-3)
A 		2.9
(3)
A 		1.5
(-1.4)
A 		1.4
(-1.7)
A 		1.3
(-2.1)
A 		1.1
(-2.7)
A 		2
avr 1.3
(-3) 		2.4
(-0.9) 		1.3
(-3) 		1.3
(-3) 		2.5
(-0.7) 		4.4
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184956_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9656
Sequence Type Exemplar sequence
Representative Public ID Y67A10A.3 NCBI
Target Description Y67A10A.3 /REP_DB=WormBase Gene ID /WP=CE25542 /TR=Q9U1U7 /GB=CAB60453.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070339(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070339 NCBI Caenorhabditis elegans Y67A10A.3 (Y67A10A.3) mRNA, complete cds. 11/11 None
SNAP00000008005 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14328962:14329852:-1 11/11 None
GENEFINDER00000008024 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14323353:14335608:-1 10/11 None
Y67A10A.3 ENSEMBL cdna:known chromosome:CEL140:IV:14328962:14336458:-1 gene:Y67A10A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14328967-14336464(-) 99.21 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67A10A.3
Entrez Gene 190507 Entrez gene
SwissProt Q9U1U7 EMBL-EBI
WormBase CE36677 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60453 Hypothetical protein Y67A10A.3 [Caenorhabditis elegans] ref|NP_502740.2| Y67A10A.3 [Caenorhabditis elegans] 0.0
blast CAB07494 Hypothetical protein C38D9.5 [Caenorhabditis elegans] emb|CAB03951.1| Hypothetical protein C38D9.5 [Caenorhabditis elegans] ref|NP_507453.1| C38D9.5 [Caenorhabditis elegans] 1.0E-126
blast CAB60453 Hypothetical protein Y67A10A.3 [Caenorhabditis elegans] ref|NP_502740.2| Y67A10A.3 [Caenorhabditis elegans] 1.0E-101
blast CAE61517 Hypothetical protein CBG05417 [Caenorhabditis briggsae] 5.0E-50
blast CAB07494 Hypothetical protein C38D9.5 [Caenorhabditis elegans] emb|CAB03951.1| Hypothetical protein C38D9.5 [Caenorhabditis elegans] ref|NP_507453.1| C38D9.5 [Caenorhabditis elegans] 1.0E-31
blast CAA93497 Hypothetical protein F56D5.9 [Caenorhabditis elegans] ref|NP_501662.1| F56D5.9 [Caenorhabditis elegans] 4.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 9.7E-10
Pfam IPR002110 EMBL-EBI Ankyrin 0.0029
Pfam IPR002110 EMBL-EBI Ankyrin 0.41
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502740.2 1 1106-1128
Y67A10A.3 1 1106-1128
Sequence
Target Sequence 
>C. ELEGANS:184956_AT
gaatatggcaccttgcttcaaatcaaagactttttcaatcgaatgaatgttccatacctg
tttggggatcaattccagcatgttctaactgaattgggagtttcaccggagcatttgttt
gatggcaaatggaattgggtcaggggaccaagttatcatcgcaaggactacccgaaaaac
ttttttgttcactttgaggccgactacttgaaaactgaatgggactacaagaattcaatg
tttgaagaaatgcacaatgagattctgagcaccgacgagttgattcatttcttgttggct
tttgaaatcaattccgagaaggttttggaaacgaatgcgaagaataaaaaattgaatggg
ctacacaaagcggaggcgagttctgtggtgaaaagtgagaaagagaagaagaaaaacaag
aggaatacggcggataacactacaactacgggagctacgggaaccacggtgacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATATGGCACCTTGCTTCAAATCA 31 327 4027 Antisense
GAATGTTCCATACCTGTTTGGGGAT 616 329 4071 Antisense
GGGATCAATTCCAGCATGTTCTAAC 696 495 4091 Antisense
GAATTGGGAGTTTCACCGGAGCATT 418 323 4117 Antisense
GTCAGGGGACCAAGTTATCATCGCA 331 465 4165 Antisense
TTTGTTCACTTTGAGGCCGACTACT 68 665 4210 Antisense
ATGAGATTCTGAGCACCGACGAGTT 689 43 4283 Antisense
GAGTTGATTCATTTCTTGTTGGCTT 674 397 4303 Antisense
AAGCGGAGGCGAGTTCTGTGGTGAA 53 149 4394 Antisense
ATACGGCGGATAACACTACAACTAC 466 21 4451 Antisense
GGAGCTACGGGAACCACGGTGACAA 642 519 4477 Antisense
Sequence Source Affymetrix Proprietary Database