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[184955_at]

Description F35F10.7 /REP_DB=WormBase Gene ID /WP=CE09932 /TR=Q9GYU2 /GB=AAF99932.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1394
1 2 3 4 range
A 30.5
(-3)
A 		63
(-2.8)
A 		46
(-2.9)
A 		1162.4
(3)
P 		1132
B 28.4
(-3)
A 		63.1
(-2.8)
A 		45.9
(-2.9)
A 		1414.5
(3)
P 		1386
C 20.4
(-3)
A 		43.1
(-2.9)
A 		45.1
(-2.9)
A 		1196.9
(3)
P 		1177
avr 26.4
(-3) 		56.4
(-2.9) 		45.7
(-2.9) 		1257.9
(3) 		1232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 28
(-2.9)
A 		34.8
(-2.7)
A 		37.4
(-2.6)
A 		24.5
(-3)
A 		32.7
(-2.7)
A 		218.3
(3)
P 		194
B 39.5
(-2.7)
A 		30.6
(-3)
A 		53
(-2.1)
P 		33.9
(-2.9)
A 		63.1
(-1.7)
P 		186.3
(3)
P 		156
C 22.7
(-3)
A 		37.4
(-2.5)
A 		45.2
(-2.3)
A 		59.9
(-1.8)
A 		45.5
(-2.3)
A 		208.2
(3)
P 		186
avr 30.1
(-3) 		34.3
(-2.9) 		45.2
(-2.5) 		39.4
(-2.7) 		47.1
(-2.4) 		204.3
(3) 		174
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 295
1 2 3 4 range
A 11.1
(-3)
A 		13.7
(-2.9)
A 		12
(-3)
A 		170.2
(3)
P 		159
B 9.1
(-3)
A 		15.6
(-2.9)
A 		10.6
(-3)
A 		301.4
(3)
P 		292
C 6.7
(-3)
A 		12.4
(-2.8)
A 		15.7
(-2.7)
A 		201.8
(3)
P 		195
avr 9
(-3) 		13.9
(-2.9) 		12.8
(-2.9) 		224.5
(3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 5.2
(-3)
A 		12.4
(-2.1)
A 		8.2
(-2.6)
A 		6.2
(-2.9)
A 		9.9
(-2.4)
A 		53.2
(3)
P 		48
B 13.7
(-2.5)
A 		10.2
(-2.9)
A 		12.9
(-2.6)
P 		9
(-3)
A 		25.7
(-1.3)
P 		69.5
(3)
P 		61
C 8.4
(-3)
A 		11.4
(-2.7)
A 		11.5
(-2.7)
A 		12
(-2.6)
A 		14.7
(-2.4)
A 		69.7
(3)
P 		61
avr 9.1
(-3) 		11.3
(-2.8) 		10.9
(-2.8) 		9.1
(-3) 		16.8
(-2.2) 		64.1
(3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184955_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15133
Sequence Type Exemplar sequence
Representative Public ID F35F10.7 NCBI
Target Description F35F10.7 /REP_DB=WormBase Gene ID /WP=CE09932 /TR=Q9GYU2 /GB=AAF99932.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071508(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071508 NCBI Caenorhabditis elegans F35F10.7 (F35F10.7) mRNA, complete cds. 11/11 None
SNAP00000011240 ENSEMBL cdna:SNAP chromosome:CEL140:V:3286258:3287226:-1 9/11 None
F35F10.7 ENSEMBL cdna:known chromosome:CEL140:V:3286258:3287226:-1 gene:F35F10.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000011252 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3286257-3287226(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35F10.7
Entrez Gene 185312 Entrez gene
SwissProt Q9GYU2 EMBL-EBI
WormBase CE09932 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99932 Hypothetical protein F35F10.7 [Caenorhabditis elegans] ref|NP_503909.1| F35F10.7 [Caenorhabditis elegans] 1.0E-134
blast AAF99932 Hypothetical protein F35F10.7 [Caenorhabditis elegans] ref|NP_503909.1| F35F10.7 [Caenorhabditis elegans] 1.0E-112
blast AAF99933 Hypothetical protein F35F10.6 [Caenorhabditis elegans] ref|NP_503910.1| F35F10.6 [Caenorhabditis elegans] 6.0E-89
blast AAC27092 Hypothetical protein C04E12.6 [Caenorhabditis elegans] ref|NP_503933.1| C04E12.6 [Caenorhabditis elegans] 2.0E-79
blast AAF99933 Hypothetical protein F35F10.6 [Caenorhabditis elegans] ref|NP_503910.1| F35F10.6 [Caenorhabditis elegans] 1.0E-68
blast AAC27092 Hypothetical protein C04E12.6 [Caenorhabditis elegans] ref|NP_503933.1| C04E12.6 [Caenorhabditis elegans] 5.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 1.0E-120
Sequence
Target Sequence 
>C. ELEGANS:184955_AT
aagttcagcggttattgtctacgaggaattggcgaagtcaggaggttattgctgcaggcc
gtctaaaatggaagagtcttatgtaaaagttgaccaagtagttcaagagatggcgaaaat
aacatcaaaatgtgctattcacctaagctctcacgcactcaaaaacacaatccagatcgt
cagaactgccttttctggtgagtatactcaaaacgataaggatggaaatgttccagaagg
gaatgaggtcaagttcgatggagatgaaactgttatgaagaccactgtcaactgtgagaa
gcttgtcgaggatatcaacgagttcatggaggaggatagacagatgtatggggcattgga
aatccaaatcatggaagagtcagagagaaacatagacggttatgcctacttcagttttct
aaaatttgttccatgcggaaacatacaccttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTCAGCGGTTATTGTCTACGAG 524 155 162 Antisense
GGAATTGGCGAAGTCAGGAGGTTAT 296 533 186 Antisense
CAGGAGGTTATTGCTGCAGGCCGTC 191 209 200 Antisense
ATTGCTGCAGGCCGTCTAAAATGGA 578 5 209 Antisense
AAATGTGCTATTCACCTAAGCTCTC 162 121 289 Antisense
GCTCTCACGCACTCAAAAACACAAT 101 301 308 Antisense
GAACTGCCTTTTCTGGTGAGTATAC 671 347 344 Antisense
AGACCACTGTCAACTGTGAGAAGCT 230 71 440 Antisense
GAAGCTTGTCGAGGATATCAACGAG 364 341 459 Antisense
AAACATAGACGGTTATGCCTACTTC 29 127 549 Antisense
GTTCCATGCGGAAACATACACCTTC 404 441 589 Antisense
Sequence Source Affymetrix Proprietary Database