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[184954_at] G-protein coupled receptor, srv family

Description Y105C5B.4 /REP_DB=WormBase Gene ID /WP=CE24080 /TR=Q9U316 /GB=CAB60312.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 37      6grp_cgc > 12      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 20.7
(0.1)
A 		33
(3)
A 		7.7
(-3)
A 		18.7
(-0.4)
A 		25
B 32.5
(2.4)
P 		36
(3)
A 		4.6
(-2.8)
A 		3.3
(-3)
A 		33
C 37.4
(2.8)
P 		16.4
(-1.4)
A 		8.6
(-3)
A 		38.2
(3)
A 		30
avr 30.2
(3) 		28.5
(2.6) 		7
(-3) 		20.1
(0.4) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 45.8
(3)
A 		28.6
(0.3)
A 		29.8
(0.5)
A 		6.9
(-3)
A 		27
(0.1)
A 		18
(-1.3)
A 		39
B 39.2
(3)
P 		17.9
(-1)
A 		7
(-3)
A 		11
(-2.3)
A 		12.5
(-2)
A 		18.3
(-0.9)
A 		32
C 26.6
(0.4)
A 		32.9
(1.9)
A 		13.3
(-2.9)
A 		37.2
(3)
A 		21.8
(-0.8)
A 		12.8
(-3)
A 		24
avr 37.2
(3) 		26.5
(-0.1) 		16.7
(-2.9) 		18.4
(-2.4) 		20.4
(-1.8) 		16.4
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 7.5
(3)
A 		7.2
(2.7)
A 		2
(-3)
A 		2.7
(-2.2)
A 		6
B 10.4
(3)
P 		8.9
(2.1)
A 		1.1
(-2.8)
A 		0.7
(-3)
A 		10
C 12.4
(3)
P 		4.7
(-1.9)
A 		3
(-3)
A 		6.4
(-0.8)
A 		9
avr 10.1
(3) 		6.9
(0.6) 		2
(-3) 		3.3
(-2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 8.4
(1.7)
A 		10.2
(3)
A 		6.5
(0.4)
A 		1.7
(-3)
A 		8.2
(1.6)
A 		4.4
(-1.1)
A 		9
B 13.6
(3)
P 		6
(-0.8)
A 		1.7
(-3)
A 		2.9
(-2.4)
A 		5.1
(-1.3)
A 		6.8
(-0.4)
A 		12
C 9.9
(2.9)
A 		10
(3)
A 		3.4
(-3)
A 		7.5
(0.7)
A 		7.1
(0.4)
A 		4.3
(-2.2)
A 		7
avr 10.6
(3) 		8.7
(1.3) 		3.9
(-3) 		4
(-2.9) 		6.8
(-0.4) 		5.2
(-1.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184954_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9659
Sequence Type Exemplar sequence
Representative Public ID Y105C5B.4 NCBI
Target Description Y105C5B.4 /REP_DB=WormBase Gene ID /WP=CE24080 /TR=Q9U316 /GB=CAB60312.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070492(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070492 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-14) (srv-14) mRNA, complete cds. 11/11 None
Y105C5B.4 ENSEMBL cdna:known chromosome:CEL140:IV:15891220:15894191:-1 gene:Y105C5B.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15892005-15894197(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srv family
Gene Symbol srv-14
Ensembl Y105C5B.4
Entrez Gene 190887 Entrez gene
SwissProt Q9U316 EMBL-EBI
WormBase CE33203 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60312 Hypothetical protein Y105C5B.4 [Caenorhabditis elegans] ref|NP_502893.2| Serpentine Receptor, class V family member (srv-14) [Caenorhabditis elegans] 1.0E-170
blast AAO38573 Serpentine receptor, class v protein 13 [Caenorhabditis elegans] ref|NP_872111.1| Serpentine Receptor, class V family member (srv-13) [Caenorhabditis elegans] 2.0E-91
blast CAE61546 Hypothetical protein CBG05452 [Caenorhabditis briggsae] 4.0E-89
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502893.2 7 22-44,57-79,99-121,142-164,191-213,238-260,273-295
Y105C5B.4 7 22-44,57-79,99-121,142-164,191-213,238-260,273-295
Sequence
Target Sequence 
>C. ELEGANS:184954_AT
ttcaatttctcccgggattgggtataggatgttgcacatttttcaatacaacggaaatat
atataaacggaaacggaggaattattccaagatttattgacaaacagatgacatctacat
ttttcaaaattggcggctcttttctatttctcaactgcctctacctgataattgcctatt
tttatttattctactcgctgaaaaagcgaaattccagaattgcaaattttcccgtttcaa
agtcgaaacaaattcaaaaattgcgagaaattcggctattcatcatgatttccatcaccg
tcgcagttcaactaacaattttaatatttttttcgctgaagcttttgaaatttttcgagt
taaatatggaagagttttacctattctataatgctttgagtgacctatttgcaagtataa
atccgtatttgttatggatattttcggattcgctgcgaaaatatgtatattggaaaatgg
gaattaaaagtcctgtttcaagtcaaataactgttgctgggtttacaattccgactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAATTTCTCCCGGGATTGGGTAT 369 683 482 Antisense
CAACTGCCTCTACCTGATAATTGCC 568 187 633 Antisense
ATTTTTATTTATTCTACTCGCTGAA 206 15 659 Antisense
TGCAAATTTTCCCGTTTCAAAGTCG 520 571 702 Antisense
GCGAGAAATTCGGCTATTCATCATG 66 291 744 Antisense
TATTCATCATGATTTCCATCACCGT 480 663 758 Antisense
GAGTTTTACCTATTCTATAATGCTT 501 397 853 Antisense
AATGCTTTGAGTGACCTATTTGCAA 692 165 871 Antisense
TATGGATATTTTCGGATTCGCTGCG 527 655 914 Antisense
TAAAAGTCCTGTTTCAAGTCAAATA 193 639 966 Antisense
GTTGCTGGGTTTACAATTCCGACTG 367 437 994 Antisense
Sequence Source Affymetrix Proprietary Database