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[184953_at]

Description Y113G7B.3 /REP_DB=WormBase Gene ID /WP=CE24144 /TR=Q9U2W8 /GB=CAB54338.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 71      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 90      6grp_total > 72      4grp_total > 08      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 107.3
(-3)
P 		110.8
(-2.9)
P 		168
(-0.5)
P 		250.5
(3)
P 		143
B 128.2
(-2.1)
P 		103.3
(-3)
P 		183.8
(-0.2)
P 		278.7
(3)
P 		175
C 125.8
(-3)
P 		134.8
(-2.5)
P 		199.5
(1)
P 		236.7
(3)
P 		111
avr 120.4
(-2.8) 		116.3
(-3) 		183.8
(-0.1) 		255.3
(3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 93.1
(-2.2)
P 		130.1
(-0.6)
P 		203
(2.5)
P 		215.8
(3)
P 		153.9
(0.4)
P 		74.8
(-3)
P 		141
B 91.1
(-2.7)
P 		121.3
(-1.2)
P 		123.9
(-1.1)
P 		207.5
(3)
P 		187.9
(2)
P 		85.5
(-3)
P 		122
C 85
(-2.5)
P 		100.8
(-1.9)
P 		152.7
(0.4)
P 		212.6
(3)
P 		176.8
(1.4)
P 		74.5
(-3)
P 		138
avr 89.7
(-2.5) 		117.4
(-1.2) 		159.9
(0.7) 		212
(3) 		172.9
(1.2) 		78.3
(-3) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 39.1
(1.5)
P 		24.1
(-3)
P 		43.9
(3)
P 		36.7
(0.8)
P 		20
B 40.9
(-0.3)
P 		25.5
(-3)
P 		42.6
(0)
P 		59.4
(3)
P 		34
C 41.6
(-2.5)
P 		38.8
(-3)
P 		69.5
(3)
P 		39.9
(-2.8)
P 		31
avr 40.5
(-0.1) 		29.5
(-3) 		52
(3) 		45.3
(1.2) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 17.2
(-3)
P 		46.3
(1.7)
P 		44.2
(1.3)
P 		54.7
(3)
P 		46.5
(1.7)
P 		18.2
(-2.8)
P 		38
B 31.7
(-2.8)
P 		40.4
(-1.7)
P 		30.1
(-3)
P 		55
(0.2)
P 		76.3
(3)
P 		31.9
(-2.8)
P 		46
C 31.5
(-1.8)
P 		30.7
(-1.9)
P 		38.9
(-0.4)
P 		42.8
(0.3)
P 		57.2
(3)
P 		24.9
(-3)
P 		32
avr 26.8
(-2.7) 		39.1
(-0.6) 		37.7
(-0.8) 		50.8
(1.4) 		60
(3) 		25
(-3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184953_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13350
Sequence Type Exemplar sequence
Representative Public ID Y113G7B.3 NCBI
Target Description Y113G7B.3 /REP_DB=WormBase Gene ID /WP=CE24144 /TR=Q9U2W8 /GB=CAB54338.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075492(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075492 NCBI Caenorhabditis elegans Y113G7B.3 (Y113G7B.3) mRNA, complete cds. 11/11 None
SNAP00000024705 ENSEMBL cdna:SNAP chromosome:CEL140:V:20188581:20190115:-1 11/11 None
GENEFINDER00000024730 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20188581:20193102:-1 11/11 None
Y113G7B.3 ENSEMBL cdna:known chromosome:CEL140:V:20188581:20190115:-1 gene:Y113G7B.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20188580-20190115(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y113G7B.3
Entrez Gene 190970 Entrez gene
SwissProt Q9U2W8 EMBL-EBI
WormBase CE24144 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54338 Hypothetical protein Y113G7B.3 [Caenorhabditis elegans] ref|NP_507893.1| Y113G7B.3 [Caenorhabditis elegans] 0.0
blast CAB54325 Hypothetical protein Y113G7B.2 [Caenorhabditis elegans] ref|NP_507894.1| Serpentine Receptor, class H family member (srh-217) [Caenorhabditis elegans] 3.0E-69
blast CAB54329 Hypothetical protein Y113G7B.7 [Caenorhabditis elegans] ref|NP_507897.1| Y113G7B.7 [Caenorhabditis elegans] 9.0E-57
blast CAB54329 Hypothetical protein Y113G7B.7 [Caenorhabditis elegans] ref|NP_507897.1| Y113G7B.7 [Caenorhabditis elegans] 1.0E-56
blast CAB54328 Hypothetical protein Y113G7B.6 [Caenorhabditis elegans] ref|NP_507898.1| Y113G7B.6 [Caenorhabditis elegans] 3.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.6E-42
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.2E-11
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.6E-42
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.4E-68
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.2E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024730 3 13-35,55-77,89-111
Sequence
Target Sequence 
>C. ELEGANS:184953_AT
agtatcctaaacttcgactggacgaattcaaattgtccgcagggtgggactacatgatga
ccataaaccttctcaaagagattaaagatgtagaagatatgtttcaagccaaaaaagtta
tcctggatgtttttgagttctgtcgtgatgccttctctatcctatctcactttgaacctg
gaattcttgaagaaattggaattttctgttctgatgtttatggaagtatacacaagctgt
tcacattggagcaatggaaacaggctaaatcagtcactttaaagtgcattgagggcattg
atattcccattgaacacttgttccatttgtctcgtttcgacatcaccttgtcggaagtat
cagtttctgatgctcgtaaaattagagatgttctcatgaaatcggcacaattcgaatgtg
gagagatttgtctgctgttcgattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTATCCTAAACTTCGACTGGACGA 352 61 374 Antisense
GACGAATTCAAATTGTCCGCAGGGT 519 379 394 Antisense
CCGCAGGGTGGGACTACATGATGAC 20 263 410 Antisense
ACATGATGACCATAAACCTTCTCAA 187 105 425 Antisense
TTTTGAGTTCTGTCGTGATGCCTTC 29 669 504 Antisense
TTCTCTATCCTATCTCACTTTGAAC 443 691 526 Antisense
GGAAACAGGCTAAATCAGTCACTTT 116 527 629 Antisense
GATATTCCCATTGAACACTTGTTCC 207 427 673 Antisense
CTTGTTCCATTTGTCTCGTTTCGAC 113 215 690 Antisense
CTCGTTTCGACATCACCTTGTCGGA 617 231 704 Antisense
AGAGATTTGTCTGCTGTTCGATTCA 243 69 795 Antisense
Sequence Source Affymetrix Proprietary Database