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[184952_at]

Description Y67A10A.5 /REP_DB=WormBase Gene ID /WP=CE24566 /TR=Q9U1U9 /GB=CAB60451.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 1.8
(-2.7)
A 		3.2
(-1.3)
A 		1.5
(-3)
A 		7.4
(3)
A 		6
B 8.6
(3)
A 		2.1
(-3)
A 		4.9
(-0.4)
A 		5.1
(-0.2)
A 		7
C 3.5
(-2.6)
A 		20.8
(3)
A 		6.4
(-1.6)
A 		2.1
(-3)
A 		19
avr 4.6
(-2.6) 		8.7
(3) 		4.3
(-3) 		4.9
(-2.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 24.1
(2.3)
A 		1.2
(-3)
A 		27.2
(3)
A 		1.9
(-2.8)
A 		4
(-2.3)
A 		1.1
(-3)
A 		26
B 1.3
(-2.9)
A 		2.2
(-2.7)
A 		21.8
(3)
A 		17
(1.6)
A 		1.1
(-3)
A 		1.1
(-3)
A 		21
C 1.9
(-2.9)
A 		5
(1.7)
A 		5.9
(3)
A 		3.8
(-0.1)
A 		1.8
(-3)
A 		3.4
(-0.7)
A 		4
avr 9.1
(-0.4) 		2.8
(-2.7) 		18.3
(3) 		7.6
(-0.9) 		2.3
(-2.9) 		1.9
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.6
(-1.3)
A 		0.7
(-0.4)
A 		0.4
(-3)
A 		1.1
(3)
A 		1
B 2.7
(3)
A 		0.5
(-3)
A 		1.1
(-1.4)
A 		1.1
(-1.4)
A 		2
C 1.2
(-2.1)
A 		6
(3)
A 		2.2
(-1.1)
A 		0.4
(-3)
A 		6
avr 1.5
(-0.6) 		2.4
(3) 		1.2
(-1.8) 		0.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 4.4
(1.4)
A 		0.4
(-2.9)
A 		5.9
(3)
A 		0.5
(-2.8)
A 		1.2
(-2)
A 		0.3
(-3)
A 		6
B 0.5
(-2.9)
A 		0.7
(-2.6)
A 		5.3
(3)
A 		4.5
(2)
A 		0.4
(-3)
A 		0.4
(-3)
A 		5
C 0.7
(-2.3)
A 		1.5
(3)
A 		1.5
(3)
A 		0.8
(-1.7)
A 		0.6
(-3)
A 		1.1
(0.3)
A 		1
avr 1.9
(-0.8) 		0.9
(-2.5) 		4.2
(3) 		1.9
(-0.8) 		0.7
(-2.8) 		0.6
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184952_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9271
Sequence Type Exemplar sequence
Representative Public ID Y67A10A.5 NCBI
Target Description Y67A10A.5 /REP_DB=WormBase Gene ID /WP=CE24566 /TR=Q9U1U9 /GB=CAB60451.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070337(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070337 NCBI Caenorhabditis elegans Y67A10A.5 (Y67A10A.5) mRNA, complete cds. 11/11 None
SNAP00000008004 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14319801:14325612:-1 11/11 None
Y67A10A.5 ENSEMBL cdna:known chromosome:CEL140:IV:14319801:14321722:-1 gene:Y67A10A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14319806-14321728(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67A10A.5
Entrez Gene 190508 Entrez gene
SwissProt Q9U1U9 EMBL-EBI
WormBase CE24566 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60445 Hypothetical protein Y67A10A.4 [Caenorhabditis elegans] ref|NP_502739.1| Y67A10A.4 [Caenorhabditis elegans] 1.0E-166
blast CAB60451 Hypothetical protein Y67A10A.5 [Caenorhabditis elegans] ref|NP_502738.1| Y67A10A.5 [Caenorhabditis elegans] 1.0E-154
blast CAB60451 Hypothetical protein Y67A10A.5 [Caenorhabditis elegans] ref|NP_502738.1| Y67A10A.5 [Caenorhabditis elegans] 1.0E-144
blast NP_510671 F38E9.3 [Caenorhabditis elegans] 8.0E-54
blast CAB03947 Hypothetical protein C38D9.1 [Caenorhabditis elegans] ref|NP_507449.1| C38D9.1 [Caenorhabditis elegans] 1.0E-19
blast CAB63436 Hypothetical protein C38D9.7 [Caenorhabditis elegans] ref|NP_507447.1| C38D9.7 [Caenorhabditis elegans] 3.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-35
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.8E-43
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-35
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.4E-7
Sequence
Target Sequence 
>C. ELEGANS:184952_AT
attccattatttgacactgagacacttgaagaaattgattttgtcaactgtagcacagga
tgcctgttggatgacgatttgtttagaaatgtgaaaactttgaaattgctgggagactat
ggctcattgagcattgaaacaatcccttacttcactcatttttacataaaagtggatttt
tttacaagagataatgcaattggaattcgagatgttcttctaaacgcccaaaactttcaa
gtttgccaatttcaatttccacacaatgaccccacggaaattgccgaagtctttgatccc
ggatatcatggtggtgaaacatcacttattcaatacaataatagactttttgacttcaca
attaatatcggaccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCATTATTTGACACTGAGACAC 650 7 397 Antisense
GTCAACTGTAGCACAGGATGCCTGT 20 465 439 Antisense
GATGCCTGTTGGATGACGATTTGTT 573 413 455 Antisense
GCTGGGAGACTATGGCTCATTGAGC 62 295 504 Antisense
GAGCATTGAAACAATCCCTTACTTC 582 387 525 Antisense
CCCTTACTTCACTCATTTTTACATA 498 259 540 Antisense
GATGTTCTTCTAAACGCCCAAAACT 301 407 607 Antisense
TCCACACAATGACCCCACGGAAATT 314 587 654 Antisense
ATTGCCGAAGTCTTTGATCCCGGAT 511 7 676 Antisense
GATCCCGGATATCATGGTGGTGAAA 22 415 691 Antisense
GACTTCACAATTAATATCGGACCAG 438 371 748 Antisense
Sequence Source Affymetrix Proprietary Database