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[184951_at] 7TM chemoreceptor, srz family

Description C09G12.2 /REP_DB=WormBase Gene ID /WP=CE16836 /TR=O44460 /GB=AAC25815.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 25      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 11.8
(-3)
A 		40
(-0.9)
A 		66.5
(1)
P 		93.2
(3)
M 		81
B 48.9
(-0.3)
A 		73.4
(3)
A 		53.7
(0.4)
A 		28.5
(-3)
A 		45
C 37.3
(-2.3)
A 		41.3
(-1.9)
A 		28.4
(-3)
A 		101.8
(3)
P 		73
avr 32.7
(-3) 		51.6
(-0.3) 		49.5
(-0.6) 		74.5
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 28.1
(0.9)
A 		23.3
(0.2)
A 		34.3
(1.9)
A 		41.6
(3)
A 		2.3
(-3)
A 		18.4
(-0.5)
A 		39
B 74.5
(3)
P 		38.9
(-0.2)
A 		19.2
(-2)
A 		71
(2.7)
A 		8.5
(-3)
A 		46.2
(0.4)
P 		66
C 41.5
(3)
P 		16.4
(-2.6)
A 		14.6
(-3)
A 		37.3
(2.1)
A 		26.5
(-0.3)
A 		15.1
(-2.9)
A 		27
avr 48
(2.7) 		26.2
(-0.8) 		22.7
(-1.4) 		50
(3) 		12.4
(-3) 		26.6
(-0.7) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 4.3
(-3)
A 		8.7
(-1)
A 		17.4
(3)
P 		13.6
(1.3)
M 		13
B 15.6
(1.8)
A 		18.1
(3)
A 		12.4
(0.2)
A 		6.1
(-3)
A 		12
C 12.4
(-0.9)
A 		11.9
(-1.4)
A 		9.9
(-3)
A 		17.2
(3)
P 		7
avr 10.8
(-3) 		12.9
(2.3) 		13.2
(3) 		12.3
(0.8) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 5.2
(-0.2)
A 		8.3
(1.7)
A 		7.5
(1.2)
A 		10.5
(3)
A 		0.7
(-3)
A 		4.5
(-0.7)
A 		10
B 25.9
(3)
P 		12.9
(-0.5)
A 		4.7
(-2.7)
A 		18.8
(1.1)
A 		3.4
(-3)
A 		17.2
(0.7)
P 		23
C 15.4
(3)
P 		5
(-2.3)
A 		3.7
(-3)
A 		7.5
(-1.1)
A 		8.6
(-0.5)
A 		5
(-2.3)
A 		12
avr 15.5
(3) 		8.7
(-0.6) 		5.3
(-2.4) 		12.3
(1.3) 		4.2
(-3) 		8.9
(-0.5) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184951_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10742
Sequence Type Exemplar sequence
Representative Public ID C09G12.2 NCBI
Target Description C09G12.2 /REP_DB=WormBase Gene ID /WP=CE16836 /TR=O44460 /GB=AAC25815.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067958(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067958 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-79) (srz-79) mRNA, complete cds. 11/11 None
C09G12.2 ENSEMBL cdna:known chromosome:CEL140:IV:3493607:3495159:1 gene:C09G12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001987 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3493612-3495165(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srz family
Gene Symbol srz-79
Ensembl C09G12.2
Entrez Gene 182468 Entrez gene
SwissProt O44460 EMBL-EBI
WormBase CE16836 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25815 Serpentine receptor, class z protein 79 [Caenorhabditis elegans] ref|NP_500359.1| Serpentine Receptor, class Z family member (srz-79) [Caenorhabditis elegans] 1.0E-177
blast AAC25814 Serpentine receptor, class z protein 78 [Caenorhabditis elegans] ref|NP_500358.2| Serpentine Receptor, class Z family member (srz-78) [Caenorhabditis elegans] 1.0E-86
blast CAB05238 Hypothetical protein K03D3.1 [Caenorhabditis elegans] ref|NP_502945.1| Serpentine Receptor, class Z family member (srz-74) [Caenorhabditis elegans] 9.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 3.3E-63
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500359.1 7 24-46,65-87,97-128,149-171,186-208,228-250,260-282
C09G12.2 7 24-46,65-87,97-128,149-171,186-208,228-250,260-282
Sequence
Target Sequence 
>C. ELEGANS:184951_AT
tatatctctgcaccgcagcatttcactttataacattccttttggccgctcaacgctttt
taatattcttcttccccaacacagaaaagcatgttgctgtatttcaaaagttcttgttta
agcatatctggaaggtgtatttagttatatttgtaaaggaagttacgctttttattatat
tcaaccacaatacaagtgacagtagaaggacaacaaattttggagtttatattttgacga
tattttctttatcctatgcattgctatttctttctacggtattttatattccaataatga
tcagtgcttggaaagtttatccagctcaaaagtgtgcggtgcaaaagtacatttattggc
agacactaacagttttcatatttaaatctacagctatagtcatattcatctaccaaagca
cctttggcgcgtattccacagtacactacacatcgggcatactcgcgacagatgttgtca
caactcccctaatagtacaaatttcgtatttgggaagtaaccggtggacttcaaagtctt
ctgttcccttaaagtggaagaagttcttccgagttctgtttgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATATCTCTGCACCGCAGCATTTCA 54 661 347 Antisense
TTTATAACATTCCTTTTGGCCGCTC 20 673 373 Antisense
TTGGCCGCTCAACGCTTTTTAATAT 688 707 388 Antisense
TATTCTTCTTCCCCAACACAGAAAA 446 663 410 Antisense
TATGCATTGCTATTTCTTTCTACGG 458 655 601 Antisense
GTCATATTCATCTACCAAAGCACCT 434 467 745 Antisense
CTTTGGCGCGTATTCCACAGTACAC 602 221 768 Antisense
TACACTACACATCGGGCATACTCGC 397 643 788 Antisense
GACAGATGTTGTCACAACTCCCCTA 547 367 813 Antisense
GGACTTCAAAGTCTTCTGTTCCCTT 677 523 872 Antisense
AAGTTCTTCCGAGTTCTGTTTGATA 41 157 907 Antisense
Sequence Source Affymetrix Proprietary Database