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[184950_at]

Description K09E10.2 /REP_DB=WormBase Gene ID /WP=CE12018 /TR=O01856 /GB=AAC48045.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 2.5
(-3)
A 		18.8
(0.6)
A 		4.7
(-2.5)
A 		29.7
(3)
A 		27
B 3.6
(-2.8)
A 		35.4
(3)
A 		4.6
(-2.6)
A 		2.6
(-3)
A 		33
C 14.5
(-3)
A 		24.9
(-1.9)
A 		28.8
(-1.5)
A 		70.8
(3)
P 		56
avr 6.9
(-3) 		26.4
(1.3) 		12.7
(-1.7) 		34.4
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 4.2
(-3)
A 		30.9
(1.6)
A 		39.1
(3)
A 		20.8
(-0.1)
A 		32.2
(1.8)
A 		32.2
(1.8)
A 		35
B 3.5
(-3)
A 		13.4
(-1.5)
A 		20.1
(-0.6)
A 		44.2
(3)
A 		11
(-1.9)
A 		17.1
(-1)
A 		41
C 3.8
(-2.6)
A 		40.2
(3)
A 		8.7
(-1.8)
A 		1.2
(-3)
A 		14.4
(-1)
A 		24.5
(0.6)
A 		39
avr 3.8
(-3) 		28.2
(3) 		22.6
(1.6) 		22.1
(1.5) 		19.2
(0.8) 		24.6
(2.1) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.9
(-3)
A 		4.1
(2.5)
A 		1.2
(-2.5)
A 		4.4
(3)
A 		4
B 1.1
(-2.6)
A 		8.7
(3)
A 		1.1
(-2.6)
A 		0.6
(-3)
A 		8
C 4.8
(-3)
A 		7.2
(-1)
A 		10
(1.4)
A 		11.9
(3)
P 		7
avr 2.3
(-3) 		6.7
(3) 		4.1
(-0.5) 		5.6
(1.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.8
(-3)
A 		11
(3)
A 		8.5
(1.5)
A 		5.3
(-0.4)
A 		9.7
(2.2)
A 		7.8
(1.1)
A 		10
B 1.2
(-3)
A 		4.4
(-1.2)
A 		4.9
(-0.9)
A 		11.7
(3)
A 		4.5
(-1.1)
A 		6.4
(-0)
A 		11
C 1.4
(-2.4)
A 		12.3
(3)
A 		2.2
(-2)
A 		0.2
(-3)
A 		4.7
(-0.8)
A 		8.2
(1)
A 		12
avr 1.1
(-3) 		9.2
(3) 		5.2
(0) 		5.7
(0.4) 		6.3
(0.9) 		7.5
(1.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184950_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9667
Sequence Type Exemplar sequence
Representative Public ID K09E10.2 NCBI
Target Description K09E10.2 /REP_DB=WormBase Gene ID /WP=CE12018 /TR=O01856 /GB=AAC48045.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069944(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069944 NCBI Caenorhabditis elegans K09E10.2 (K09E10.2) mRNA, complete cds. 11/11 None
SNAP00000013651 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12308264:12311577:-1 11/11 None
GENEFINDER00000013653 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12304435:12311577:-1 11/11 None
K09E10.2 ENSEMBL cdna:known chromosome:CEL140:IV:12308264:12311577:-1 gene:K09E10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12308269-12311583(-) 99.38 100.0
Public Domain and Genome References
Gene Title
Ensembl K09E10.2
Entrez Gene 187225 Entrez gene
SwissProt O01856 EMBL-EBI
WormBase CE12018 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48045 Hypothetical protein K09E10.2 [Caenorhabditis elegans] ref|NP_502345.1| K09E10.2 [Caenorhabditis elegans] 0.0
blast AAC48044 Hypothetical protein K09E10.1 [Caenorhabditis elegans] ref|NP_502344.1| K09E10.1 [Caenorhabditis elegans] 0.0
blast NP_502342 C42C1.7 [Caenorhabditis elegans] gb|AAB97548.2| Hypothetical protein C42C1.7 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 7.0E-61
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502345.1 9 12-34,49-71,78-97,148-167,172-194,282-304,316-338,348-365,372-394
K09E10.2 9 12-34,49-71,78-97,148-167,172-194,282-304,316-338,348-365,372-394
SNAP00000013651 9 12-34,49-71,78-97,148-167,172-194,282-304,316-338,348-365,372-394
GENEFINDER00000013653 15 12-34,49-71,78-97,148-167,172-194,282-304,316-338,348-365,372-394,704-726,733-750,760-777,835-857,912-929,942-964
Sequence
Target Sequence 
>C. ELEGANS:184950_AT
gagaggatgtgaaccactggcggcaagtccaaatgacaaacactgcttgaaaaaactgtc
tgaattcgctgagttcatcgaaaatgcaaagccagattacgcattcatgtttaccaggtt
ttttgctgttgctgataaatttaaagactccaattcaacagatctgtcaactgatagtat
ttatctcatgatgaaaagtcaattgaacaaatttattccatttatcaaaaagaaattgta
tattcttgattcatttccaagagcaaattctggttatattgcacgggttcctggtgattt
ga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGGATGTGAACCACTGGCGGCA 396 395 1524 Antisense
GAACCACTGGCGGCAAGTCCAAATG 585 343 1534 Antisense
AGTCCAAATGACAAACACTGCTTGA 650 59 1549 Antisense
AACTGTCTGAATTCGCTGAGTTCAT 338 143 1577 Antisense
GCAAAGCCAGATTACGCATTCATGT 112 319 1609 Antisense
TACGCATTCATGTTTACCAGGTTTT 560 645 1621 Antisense
TACCAGGTTTTTTGCTGTTGCTGAT 423 651 1635 Antisense
GACTCCAATTCAACAGATCTGTCAA 488 375 1669 Antisense
TTGTATATTCTTGATTCATTTCCAA 78 707 1759 Antisense
ATTCTGGTTATATTGCACGGGTTCC 198 11 1790 Antisense
ATTGCACGGGTTCCTGGTGATTTGA 564 5 1801 Antisense
Sequence Source Affymetrix Proprietary Database