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[184949_s_at]

Description F01F1.14 /REP_DB=WormBase Gene ID /WP=CE01227 /TR=Q19095 /GB=AAC46647.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 06      6grp_total > 78      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2511
1 2 3 4 range
A 77.3
(-2.9)
M 		57.6
(-3)
P 		80
(-2.9)
P 		2069.1
(3)
P 		2012
B 76.9
(-3)
P 		73.3
(-3)
P 		73.7
(-3)
P 		2566.9
(3)
P 		2494
C 61.8
(-3)
A 		77.5
(-2.9)
P 		56.1
(-3)
A 		2003.6
(3)
P 		1948
avr 72
(-3) 		69.5
(-3) 		69.9
(-3) 		2213.2
(3) 		2144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 780
1 2 3 4 5 6 range
A 95.6
(-2.6)
A 		58.1
(-3)
A 		54
(-3)
P 		107.6
(-2.5)
A 		336.8
(-0.5)
P 		741.3
(3)
P 		687
B 37
(-3)
A 		83.3
(-2.6)
P 		67.6
(-2.7)
A 		43.8
(-2.9)
A 		284.9
(-0.6)
P 		663
(3)
P 		626
C 37.2
(-2.8)
M 		86.3
(-2.4)
P 		72.4
(-2.5)
A 		5.8
(-3)
A 		319.7
(-0.6)
P 		786.1
(3)
P 		780
avr 56.6
(-3) 		75.9
(-2.8) 		64.7
(-2.9) 		52.4
(-3) 		313.8
(-0.7) 		730.1
(3) 		678
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 535
1 2 3 4 range
A 28.2
(-2.7)
M 		12.5
(-3)
P 		20.9
(-2.8)
P 		302.9
(3)
P 		290
B 24.5
(-2.9)
P 		18.1
(-3)
P 		17.1
(-3)
P 		547
(3)
P 		530
C 20.5
(-3)
A 		22.3
(-2.9)
P 		19.5
(-3)
A 		337.8
(3)
P 		318
avr 24.4
(-2.9) 		17.6
(-3) 		19.2
(-3) 		395.9
(3) 		378

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 17.6
(-2.8)
A 		20.7
(-2.7)
A 		11.8
(-3)
P 		27.3
(-2.4)
A 		101.6
(0.2)
P 		180.5
(3)
P 		169
B 12.9
(-3)
A 		27.7
(-2.6)
P 		16.4
(-2.9)
A 		11.6
(-3)
A 		115.7
(-0.3)
P 		247.2
(3)
P 		236
C 13.8
(-2.7)
M 		26.3
(-2.4)
P 		18.4
(-2.6)
A 		1.2
(-3)
A 		103.5
(-0.7)
P 		263.1
(3)
P 		262
avr 14.8
(-3) 		24.9
(-2.7) 		15.5
(-2.9) 		13.4
(-3) 		106.9
(-0.4) 		230.3
(3) 		217
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184949_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6810
Sequence Type Exemplar sequence
Representative Public ID F01F1.14 NCBI
Target Description F01F1.14 /REP_DB=WormBase Gene ID /WP=CE01227 /TR=Q19095 /GB=AAC46647.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065875(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065875 NCBI Caenorhabditis elegans F01F1.14 (F01F1.14) mRNA, complete cds. 11/11 None
F01F1.14 ENSEMBL cdna:known chromosome:CEL140:III:5882331:5882872:-1 gene:F01F1.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5882378-5882871(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F01F1.14
Entrez Gene 175830 Entrez gene
SwissProt Q19095 EMBL-EBI
WormBase CE01227 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46647 Hypothetical protein F01F1.14 [Caenorhabditis elegans] ref|NP_498276.1| F01F1.14 [Caenorhabditis elegans] 7.0E-69
blast CAE64369 Hypothetical protein CBG09056 [Caenorhabditis briggsae] 3.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498276.1 1 39-61
F01F1.14 1 39-61
Sequence
Target Sequence 
>C. ELEGANS:184949_S_AT
ggatcatttcatttcatctcttcaaatcaaaaaaaaaatataaaaagtgtgaaaacagtc
cagaaagtaataagaatcctaaaaagatgtctacttcttccaactccttccttatcactg
ttatcgcattcttcgtcatgattaatgtagttgttacacttccgctcattggaattcgag
atgatctctcaaccgaattcgttggtattggcctccgtgacgatgtggcacttcccatac
aaaagcgccgagtttctcaagaatcccaattctgtgctacacatcgagaatcatatgata
cctactgcaacaacttttggacagatcgtccacaacgacttcaaaccgctttgttcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCATTTCATTTCATCTCTTCAA 69 513 20 Antisense
CCTTCCTTATCACTGTTATCGCATT 51 271 125 Antisense
ATGTAGTTGTTACACTTCCGCTCAT 433 45 164 Antisense
GAGATGATCTCTCAACCGAATTCGT 695 395 197 Antisense
TATTGGCCTCCGTGACGATGTGGCA 660 665 225 Antisense
GATGTGGCACTTCCCATACAAAAGC 697 407 241 Antisense
AGCGCCGAGTTTCTCAAGAATCCCA 238 81 263 Antisense
GAATCCCAATTCTGTGCTACACATC 445 329 280 Antisense
ATGATACCTACTGCAACAACTTTTG 394 43 314 Antisense
GGACAGATCGTCCACAACGACTTCA 376 525 338 Antisense
ACGACTTCAAACCGCTTTGTTCACA 477 91 354 Antisense
Sequence Source Affymetrix Proprietary Database