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[184948_at]

Description Y57G11B.2 /REP_DB=WormBase Gene ID /WP=CE14920 /TR=O18225 /GB=CAB16500.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 83      4grp_highest_8_8 > 28      4grp_high_8_8 > 31      6grp_highest_nonorm > 90      6grp_total > 74      4grp_total > 0      6grp_highest_sub > 04      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 112.8
(-1.1)
P 		98.3
(-3)
P 		144
(3)
P 		105.3
(-2.1)
P 		46
B 76.3
(-2.9)
P 		75.1
(-3)
P 		142
(2.9)
P 		142.9
(3)
P 		68
C 108.1
(0)
P 		75.9
(-3)
P 		103.4
(-0.4)
P 		139.8
(3)
P 		64
avr 99.1
(-0.9) 		83.1
(-3) 		129.8
(3) 		129.3
(2.9) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 87.4
(-3)
P 		96.2
(-2.7)
P 		243.2
(3)
P 		239.5
(2.9)
P 		160.2
(-0.2)
P 		167.4
(0.1)
P 		156
B 200.1
(0.8)
P 		161.4
(-3)
P 		222.2
(3)
P 		176.6
(-1.5)
P 		186.3
(-0.5)
P 		173.1
(-1.8)
P 		61
C 104
(-3)
P 		170.8
(-0.9)
P 		115.5
(-2.6)
P 		298.2
(3)
P 		181.4
(-0.6)
P 		196.6
(-0.1)
P 		194
avr 130.5
(-3) 		142.8
(-2.3) 		193.6
(0.5) 		238.1
(3) 		176
(-0.5) 		179
(-0.3) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 41.1
(3)
P 		21.3
(-1.6)
P 		37.6
(2.2)
P 		15.4
(-3)
P 		26
B 24.3
(-0.6)
P 		18.6
(-3)
P 		32.9
(3)
P 		30.4
(2)
P 		14
C 35.8
(2.9)
P 		21.8
(-3)
P 		36
(3)
P 		23.6
(-2.2)
P 		14
avr 33.7
(2.3) 		20.6
(-3) 		35.5
(3) 		23.1
(-2) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 16.1
(-3)
P 		34.2
(-0.6)
P 		53
(2)
P 		60.7
(3)
P 		48.3
(1.3)
P 		40.8
(0.3)
P 		45
B 69.6
(1.7)
P 		53.7
(-1.6)
P 		53.9
(-1.5)
P 		46.8
(-3)
P 		75.7
(3)
P 		64.5
(0.7)
P 		29
C 38.5
(-1.5)
P 		52.1
(0.7)
P 		29.4
(-3)
P 		60
(2)
P 		58.7
(1.8)
P 		65.8
(3)
P 		36
avr 41.4
(-3) 		46.7
(-1.4) 		45.4
(-1.8) 		55.8
(1.4) 		60.9
(3) 		57
(1.8) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184948_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9632
Sequence Type Exemplar sequence
Representative Public ID Y57G11B.2 NCBI
Target Description Y57G11B.2 /REP_DB=WormBase Gene ID /WP=CE14920 /TR=O18225 /GB=CAB16500.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070366(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070366 NCBI Caenorhabditis elegans Y57G11B.2 (Y57G11B.2) mRNA, complete cds. 11/11 None
Y57G11B.2 ENSEMBL cdna:known chromosome:CEL140:IV:14564722:14567078:1 gene:Y57G11B.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021638 8/11 Cross Hyb Matching Probes None
GENEFINDER00000021644 3/11 Cross Hyb Matching Probes None
GENEFINDER00000021647 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14564727-14567084(+) 96.1 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G11B.2
Entrez Gene 190366 Entrez gene
SwissProt O18225 EMBL-EBI
WormBase CE14920 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16500 Hypothetical protein Y57G11B.2 [Caenorhabditis elegans] ref|NP_502767.1| Y57G11B.2 [Caenorhabditis elegans] 1.0E-147
blast CAE73946 Hypothetical protein CBG21570 [Caenorhabditis briggsae] 3.0E-59
blast CAE60745 Hypothetical protein CBG04431 [Caenorhabditis briggsae] 5.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502767.1 2 20-38,53-75
Y57G11B.2 2 20-38,53-75
Sequence
Target Sequence 
>C. ELEGANS:184948_AT
atcaacattttctatttgcgcatattttccagaaactattattttttcaatgaaatgttt
gaccacacatttttcaggttcccgaggaattgtcaagggcaaggatttgtcaaatttcgt
acaaaaccaatgtgatgacaatatgacctactgtttcgaatcttacaattcaaatctgac
agaagtcactgcaagctgtcaaagtatgggaaccgatacgaaattgttggaagtgtgtaa
gatggatggaaaatgcaaagaacgttctgatatcgacgtgaccgtatgttgctgtacatc
agacctgtgtaatcttcaagatgacttgaaaccaactccagaaacgcctgaagttgatgg
aagtactgattttgagcagaattcgacggaaattctggtgacgtcatcagaatccgaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAACATTTTCTATTTGCGCATAT 287 27 441 Antisense
ATTTGCGCATATTTTCCAGAAACTA 350 17 454 Antisense
GACCACACATTTTTCAGGTTCCCGA 353 383 501 Antisense
GGTTCCCGAGGAATTGTCAAGGGCA 438 505 517 Antisense
TATGACCTACTGTTTCGAATCTTAC 634 655 582 Antisense
AGAAGTCACTGCAAGCTGTCAAAGT 257 75 621 Antisense
GAACGTTCTGATATCGACGTGACCG 352 347 700 Antisense
CGACGTGACCGTATGTTGCTGTACA 628 251 714 Antisense
GTTGCTGTACATCAGACCTGTGTAA 695 439 728 Antisense
AGATGACTTGAAACCAACTCCAGAA 510 67 759 Antisense
TGGTGACGTCATCAGAATCCGAAAT 585 549 836 Antisense
Sequence Source Affymetrix Proprietary Database