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[184947_s_at]

Description ZC84.3 /REP_DB=WormBase Gene ID /WP=CE15022 /TR=SW:Q03609 /GB=CAA79568.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 13      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 51      6grp_total > 24      4grp_total > 47      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 890
1 2 3 4 range
A 879.9
(3)
P 		289.8
(-1.9)
P 		151.6
(-3)
P 		236.5
(-2.3)
P 		728
B 1041.5
(3)
P 		314.6
(-2)
P 		173
(-3)
P 		201.9
(-2.8)
P 		869
C 992.2
(3)
P 		262.7
(-2.5)
P 		247.7
(-2.7)
P 		203.4
(-3)
P 		789
avr 971.2
(3) 		289
(-2.2) 		190.8
(-3) 		213.9
(-2.8) 		780

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 628
1 2 3 4 5 6 range
A 702.3
(1.4)
P 		867.4
(3)
P 		478.8
(-0.8)
P 		435.5
(-1.3)
P 		302.6
(-2.6)
P 		260.1
(-3)
P 		607
B 730.7
(2.1)
P 		815.5
(3)
P 		598.9
(0.7)
P 		276.3
(-2.8)
P 		317.4
(-2.4)
P 		257.9
(-3)
P 		558
C 886
(3)
P 		839.9
(2.6)
P 		638
(0.6)
P 		376.6
(-1.9)
P 		261.5
(-3)
P 		288.3
(-2.7)
P 		625
avr 773
(2.3) 		840.9
(3) 		571.9
(0.2) 		362.8
(-2) 		293.8
(-2.7) 		268.8
(-3) 		572
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 298
1 2 3 4 range
A 320.4
(3)
P 		62.9
(-2.4)
P 		39.6
(-2.9)
P 		34.6
(-3)
P 		286
B 332.1
(3)
P 		77.7
(-2.2)
P 		40.1
(-3)
P 		43
(-2.9)
P 		292
C 328.5
(3)
P 		75.5
(-2.2)
P 		86.3
(-1.9)
P 		34.3
(-3)
P 		294
avr 327
(3) 		72
(-2.3) 		55.3
(-2.6) 		37.3
(-3) 		290

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 129.5
(-1.4)
P 		308.5
(3)
P 		104.3
(-2)
P 		110.4
(-1.8)
P 		91.3
(-2.3)
P 		63.3
(-3)
P 		245
B 254.3
(2.5)
P 		271.5
(3)
P 		145.4
(-0.8)
P 		73.2
(-3)
P 		129
(-1.3)
P 		96.2
(-2.3)
P 		198
C 328.4
(3)
P 		256.3
(1.3)
P 		162.4
(-0.9)
P 		75.7
(-3)
P 		84.6
(-2.8)
P 		96.5
(-2.5)
P 		253
avr 237.4
(1.7) 		278.8
(3) 		137.4
(-1.4) 		86.4
(-3) 		101.6
(-2.5) 		85.3
(-3) 		194
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184947_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6821
Sequence Type Exemplar sequence
Representative Public ID ZC84.3 NCBI
Target Description ZC84.3 /REP_DB=WormBase Gene ID /WP=CE15022 /TR=SW:Q03609 /GB=CAA79568.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066633(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066633 NCBI Caenorhabditis elegans ZC84.3 (ZC84.3) mRNA, complete cds. 11/11 None
SNAP00000020248 ENSEMBL cdna:SNAP chromosome:CEL140:III:9186589:9190982:-1 11/11 None
GENEFINDER00000020260 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9186589:9190982:-1 11/11 None
ZC84.3 ENSEMBL cdna:known chromosome:CEL140:III:9186070:9191014:-1 gene:ZC84.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9186584-9190978(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC84.3
Entrez Gene 176298 Entrez gene
SwissProt Q03609 EMBL-EBI
WormBase CE15022 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA79568 Hypothetical protein ZC84.3 [Caenorhabditis elegans] ref|NP_499034.1| ZC84.3 [Caenorhabditis elegans] sp|Q03609|YN83_CAEEL Hypothetical protein ZC84.3 in chromosome III 0.0
blast CAE62778 Hypothetical protein CBG06947 [Caenorhabditis briggsae] 0.0
blast CAA78472 Hypothetical protein R107.6 [Caenorhabditis elegans] ref|NP_499005.2| CLASP family of microtubule-binding proteins family member (cls-2) [Caenorhabditis elegans] sp|P32744|CLS2_CAEEL Kinetochore protein CLASP-2 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010705 EMBL-EBI Mast, C-terminal 1.2E-84
Pfam IPR010705 EMBL-EBI Mast, C-terminal 1.2E-84
Pfam IPR010705 EMBL-EBI Mast, C-terminal 1.2E-84
Sequence
Target Sequence 
>C. ELEGANS:184947_S_AT
gaggtttcggtgtgtgggagcagtgttatgcaaaacttcttctcaacttattcgaaattc
tttcaaaaagtcgatcagaaaataataagaaaatgtgcctacgaattctcgggaagatgt
gcaccgcgcaagctgcaaaactgtttgattcgactgaaatggcagtgtgcaaagttctgg
atgcagctgtaaatacgaacgacgcaacaacggctcttgctgtggaagattgtttgagaa
cattggcaactcatctaccactttcaaatattattaatattgcaaaagttattctaaatc
aagaacctatcgacgatgaaagagcttctctagttcttaaaatggtaacacgattatttg
aggaacttccagcagaggagttgaataatattgtagatgatatcactccaacgattatta
aagcgtatcaatctacgtcatcaactgttaggaagaccgtcgtctattgtcttgtcgcca
tggtaaatcgagttggcgagcaaaggatgacaccacatttcaccaagctgccaaaagcaa
tgaccaatctcatacaagtctacgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGTTTCGGTGTGTGGGAGCAGTG 359 403 1892 Antisense
CAAAACTTCTTCTCAACTTATTCGA 152 189 1922 Antisense
GAAAATGTGCCTACGAATTCTCGGG 559 353 1980 Antisense
TTCTCGGGAAGATGTGCACCGCGCA 214 693 1997 Antisense
GCACCGCGCAAGCTGCAAAACTGTT 190 315 2012 Antisense
TACGAACGACGCAACAACGGCTCTT 562 647 2085 Antisense
CATTGGCAACTCATCTACCACTTTC 45 217 2132 Antisense
GTATCAATCTACGTCATCAACTGTT 115 455 2316 Antisense
TCTATTGTCTTGTCGCCATGGTAAA 504 613 2354 Antisense
AAGGATGACACCACATTTCACCAAG 308 161 2394 Antisense
ACCAATCTCATACAAGTCTACGTCA 645 83 2434 Antisense
Sequence Source Affymetrix Proprietary Database