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[184946_at]

Description Y40H7A.11 /REP_DB=WormBase Gene ID /WP=CE21822 /TR=Q9XW97 /GB=CAA22069.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 16.9
(-2.6)
A 		12.4
(-3)
A 		17.2
(-2.6)
A 		77.9
(3)
A 		66
B 17.4
(-2.3)
A 		13.1
(-2.9)
A 		12.4
(-3)
A 		55.7
(3)
A 		43
C 52.6
(-0.9)
A 		19.1
(-3)
A 		32.3
(-2.2)
A 		113.4
(3)
A 		94
avr 29
(-1.7) 		14.9
(-3) 		20.6
(-2.5) 		82.3
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 6.6
(-3)
A 		13
(-2.3)
A 		63
(3)
A 		15.6
(-2)
A 		24.6
(-1.1)
A 		9.1
(-2.7)
A 		56
B 13.7
(-2.9)
A 		12.4
(-3)
A 		106.9
(3)
A 		17.7
(-2.7)
A 		67.6
(0.5)
A 		41.7
(-1.1)
A 		95
C 6
(-3)
A 		21.3
(-1.3)
A 		57.9
(2.7)
A 		16.2
(-1.9)
A 		34.3
(0.1)
A 		61
(3)
A 		55
avr 8.8
(-3) 		15.6
(-2.4) 		75.9
(3) 		16.5
(-2.3) 		42.2
(-0) 		37.3
(-0.5) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 6.2
(-0.6)
A 		2.7
(-3)
A 		4.5
(-1.8)
A 		11.4
(3)
A 		9
B 5.5
(-1.3)
A 		3.2
(-2.8)
A 		2.9
(-3)
A 		11.9
(3)
A 		9
C 17.4
(2.3)
A 		5.5
(-3)
A 		11.3
(-0.4)
A 		19.1
(3)
A 		14
avr 9.7
(0.4) 		3.8
(-3) 		6.2
(-1.6) 		14.1
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 1.2
(-3)
A 		4.6
(-1.4)
A 		13.7
(3)
A 		3.9
(-1.7)
A 		7.4
(-0)
A 		2.2
(-2.5)
A 		13
B 4.8
(-2.8)
A 		4.1
(-3)
A 		26
(2.6)
A 		4.7
(-2.8)
A 		27.5
(3)
A 		15.6
(-0.1)
A 		23
C 2.2
(-3)
A 		6.5
(-1.6)
A 		14.7
(1.1)
A 		3.3
(-2.6)
A 		11.1
(-0.1)
A 		20.4
(3)
A 		18
avr 2.7
(-3) 		5.1
(-2.1) 		18.1
(3) 		4
(-2.5) 		15.3
(1.9) 		12.7
(0.9) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184946_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9622
Sequence Type Exemplar sequence
Representative Public ID Y40H7A.11 NCBI
Target Description Y40H7A.11 /REP_DB=WormBase Gene ID /WP=CE21822 /TR=Q9XW97 /GB=CAA22069.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070436(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070436 NCBI Caenorhabditis elegans Y40H7A.11 (Y40H7A.11) mRNA, complete cds. 11/11 None
SNAP00000019410 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15219648:15220308:-1 11/11 None
GENEFINDER00000019414 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15217677:15220308:-1 11/11 None
Y40H7A.11 ENSEMBL cdna:known chromosome:CEL140:IV:15219648:15220308:-1 gene:Y40H7A.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15219653-15220314(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y40H7A.11
Entrez Gene 189810 Entrez gene
SwissProt Q9XW97 EMBL-EBI
WormBase CE21822 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22069 Hypothetical protein Y40H7A.11 [Caenorhabditis elegans] ref|NP_502837.1| Y40H7A.11 [Caenorhabditis elegans] 5.0E-60
blast CAA22069 Hypothetical protein Y40H7A.11 [Caenorhabditis elegans] ref|NP_502837.1| Y40H7A.11 [Caenorhabditis elegans] 8.0E-54
blast AAK84589 Hypothetical protein Y22D7AL.15 [Caenorhabditis elegans] ref|NP_497438.2| Y22D7AL.15 [Caenorhabditis elegans] 5.0E-12
blast CAE69189 Hypothetical protein CBG15224 [Caenorhabditis briggsae] 7.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502837.1 1 79-101
Y40H7A.11 1 79-101
SNAP00000019410 1 79-101
GENEFINDER00000019414 1 79-101
Sequence
Target Sequence 
>C. ELEGANS:184946_AT
tgaaaatccccaaatctactctgctccaccaccatatgaagttgccatcgggatgccgaa
agtgaatcggcaaccggctccagtattagctccgcccattgatccaaggccatgtggcag
agtgataggtgtaatttctgtgaagcaggccccaacatattcatcttatcaggagaattg
tacaagatgtcagacactggtacaaactcgagttgagcacaaaattggtatcatgtggtg
gctatgtgccaccctctcattttgtttcttcttctgctgctacctattgtttttcccgat
caccaaggacgctcaacatttttgtccaaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAAATCCCCAAATCTACTCTGCT 456 573 21 Antisense
TCCACCACCATATGAAGTTGCCATC 520 587 45 Antisense
GAAAGTGAATCGGCAACCGGCTCCA 657 359 78 Antisense
GCCCATTGATCCAAGGCCATGTGGC 147 283 114 Antisense
TAATTTCTGTGAAGCAGGCCCCAAC 472 635 152 Antisense
GCCCCAACATATTCATCTTATCAGG 137 287 169 Antisense
GTCAGACACTGGTACAAACTCGAGT 143 467 209 Antisense
TGTGGTGGCTATGTGCCACCCTCTC 601 555 254 Antisense
TTCTTCTGCTGCTACCTATTGTTTT 308 689 289 Antisense
TGTTTTTCCCGATCACCAAGGACGC 581 483 308 Antisense
GACGCTCAACATTTTTGTCCAAACT 526 379 328 Antisense
Sequence Source Affymetrix Proprietary Database