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[184944_at]

Description T06C10.3 /REP_DB=WormBase Gene ID /WP=CE04901 /TR=Q22243 /GB=AAA82300.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 41      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 13.7
(-3)
A 		30.4
(-1.6)
A 		84.4
(3)
A 		15.4
(-2.9)
A 		71
B 6.1
(-3)
A 		63
(3)
A 		10.8
(-2.5)
A 		9.6
(-2.6)
A 		57
C 7
(-3)
A 		22.2
(-0.7)
A 		16.5
(-1.6)
A 		46.7
(3)
A 		40
avr 8.9
(-3) 		38.5
(3) 		37.2
(2.7) 		23.9
(0) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 12.1
(-3)
A 		12.9
(-3)
A 		21.6
(-2.4)
A 		69.4
(0.4)
A 		87.6
(1.5)
A 		113.8
(3)
P 		102
B 44.2
(-0.7)
A 		22.6
(-2.2)
A 		40.6
(-0.9)
A 		11.8
(-3)
A 		65.2
(0.8)
A 		95.9
(3)
P 		84
C 28.7
(-2.5)
A 		21.2
(-3)
A 		39.2
(-1.8)
A 		55.3
(-0.8)
A 		37.2
(-2)
A 		114.5
(3)
P 		93
avr 28.3
(-2.4) 		18.9
(-3) 		33.8
(-2) 		45.5
(-1.2) 		63.3
(-0) 		108.1
(3) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 5
(-2.2)
A 		6.6
(-1.7)
A 		22.1
(3)
A 		2.3
(-3)
A 		20
B 1.9
(-3)
A 		15.5
(3)
A 		2.5
(-2.7)
A 		2
(-3)
A 		14
C 2.3
(-3)
A 		6.4
(1.4)
A 		5.8
(0.8)
A 		7.9
(3)
A 		6
avr 3.1
(-3) 		9.5
(2.5) 		10.1
(3) 		4.1
(-2.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 2.2
(-3)
A 		4.6
(-2.4)
A 		4.7
(-2.4)
A 		17.6
(0.6)
A 		26.4
(2.7)
A 		27.7
(3)
P 		26
B 15.4
(-0.7)
A 		7.5
(-2.2)
A 		9.9
(-1.8)
A 		3.1
(-3)
A 		26.5
(1.3)
A 		35.8
(3)
P 		33
C 10.6
(-2.2)
A 		6.5
(-3)
A 		10
(-2.3)
A 		11.1
(-2.1)
A 		12
(-2)
A 		38.3
(3)
P 		32
avr 9.4
(-2.3) 		6.2
(-3) 		8.2
(-2.6) 		10.6
(-2) 		21.6
(0.3) 		33.9
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184944_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9616
Sequence Type Exemplar sequence
Representative Public ID T06C10.3 NCBI
Target Description T06C10.3 /REP_DB=WormBase Gene ID /WP=CE04901 /TR=Q22243 /GB=AAA82300.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068906(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068906 NCBI Caenorhabditis elegans T06C10.3 (T06C10.3) mRNA, complete cds. 11/11 None
SNAP00000043496 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7870848:7873017:1 11/11 None
GENEFINDER00000043503 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7870848:7873017:1 11/11 None
T06C10.3 ENSEMBL cdna:known chromosome:CEL140:IV:7870848:7873017:1 gene:T06C10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7870853-7873023(+) 93.97 100.0
Public Domain and Genome References
Gene Title
Ensembl T06C10.3
Entrez Gene 188160 Entrez gene
SwissProt Q22243 EMBL-EBI
WormBase CE04901 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_501307 T06C10.3 [Caenorhabditis elegans] gb|AAA82300.1| Hypothetical protein T06C10.3 [Caenorhabditis elegans] 0.0
blast CAB02882 Hypothetical protein F01D4.3 [Caenorhabditis elegans] ref|NP_501934.2| F01D4.3 [Caenorhabditis elegans] 1.0E-171
blast T23792 hypothetical protein M176.9 - Caenorhabditis elegans 1.0E-161
Protein Families
Method ID Description E-Value
hanks 1.9.5 AGC group; AGC Other; DdK2 1.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR000980 EMBL-EBI SH2 motif 0.0021
Pfam IPR000980 EMBL-EBI SH2 motif 0.0022
Pfam IPR000719 EMBL-EBI Protein kinase 2.8E-59
Sequence
Target Sequence 
>C. ELEGANS:184944_AT
aatcaagttttgttctggtgcaggtagaggtatcgagtatttgcatcaaaacaattgtat
tcatcgtgacatcgctgctcgaaactgtcttctccacgaaaaagaagtcaagattaccga
ctttggtctctcccgaactggaccagtctacaaaatgaagactgcttgcaagcttccagt
caaatggcttgctccggagactttgtcaacactctcgttctcctttgccactgatacgta
cagttggggagtcacttgctacgaagtgtttgctgatggtgtagaacccttctttggaat
tcaaaattccgtggtgaagaccgatattcttgcgaacaagttcctgcagatgcctccaac
cacccctgagtctatcaagaagtacatggaagcttcgatttttgtcgaaggatcgcgtcg
tgctacaatgacgtcggcaattgcagagttcgaaaagatcaagtcggctctagaacgtcc
tccttctgatatgttatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCAAGTTTTGTTCTGGTGCAGGT 455 169 1113 Antisense
CGTGACATCGCTGCTCGAAACTGTC 673 243 1177 Antisense
CTCGAAACTGTCTTCTCCACGAAAA 391 233 1190 Antisense
TCTCTCCCGAACTGGACCAGTCTAC 100 611 1239 Antisense
GCTTGCTCCGGAGACTTTGTCAACA 8 307 1299 Antisense
TCTCCTTTGCCACTGATACGTACAG 540 609 1331 Antisense
GATGGTGTAGAACCCTTCTTTGGAA 192 409 1387 Antisense
GGTGAAGACCGATATTCTTGCGAAC 313 501 1425 Antisense
ACCACCCCTGAGTCTATCAAGAAGT 706 85 1471 Antisense
GACGTCGGCAATTGCAGAGTTCGAA 74 379 1542 Antisense
AACGTCCTCCTTCTGATATGTTATC 700 143 1586 Antisense
Sequence Source Affymetrix Proprietary Database