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[184941_at]

Description M01E11.2 /REP_DB=WormBase Gene ID /WP=CE12290 /TR=P91401 /GB=AAB37831.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 75      6grp_total > 54      4grp_total > 61      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 514
1 2 3 4 range
A 795.8
(3)
P 		555.6
(-0.5)
P 		673.5
(1.2)
P 		381.3
(-3)
P 		415
B 708.9
(2)
P 		785
(3)
P 		768.8
(2.8)
P 		336.4
(-3)
P 		449
C 813.6
(2.7)
P 		586.5
(0)
P 		840.4
(3)
P 		326.1
(-3)
P 		514
avr 772.8
(3) 		642.4
(1.2) 		760.9
(2.8) 		347.9
(-3) 		425

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 473
1 2 3 4 5 6 range
A 771.2
(-1.2)
P 		849.8
(-0)
P 		1059.5
(3)
P 		846.3
(-0.1)
P 		645.8
(-3)
P 		814.5
(-0.6)
P 		414
B 904.9
(1.2)
P 		736.3
(-1.7)
P 		1014.9
(3)
P 		821.7
(-0.2)
P 		657.6
(-3)
P 		786.4
(-0.8)
P 		357
C 706.6
(-1.1)
P 		732
(-0.7)
P 		968.8
(3)
P 		611.5
(-2.6)
P 		586.2
(-3)
P 		800.2
(0.4)
P 		383
avr 794.2
(-0.4) 		772.7
(-0.8) 		1014.4
(3) 		759.8
(-1) 		629.9
(-3) 		800.4
(-0.3) 		385
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 289.7
(3)
P 		120.6
(-1.3)
P 		176.1
(0.1)
P 		55.8
(-3)
P 		234
B 226.1
(3)
P 		193.9
(1.7)
P 		178.1
(1.1)
P 		71.7
(-3)
P 		154
C 269.3
(2.4)
P 		168.6
(-0.1)
P 		292.9
(3)
P 		55
(-3)
P 		238
avr 261.7
(3) 		161
(-0) 		215.7
(1.6) 		60.8
(-3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 142.2
(-3)
P 		302.2
(3)
P 		230.7
(0.3)
P 		214.6
(-0.3)
P 		194.9
(-1)
P 		198.3
(-0.9)
P 		160
B 314.8
(3)
P 		245.1
(-1.3)
P 		246.5
(-1.2)
P 		217.7
(-3)
P 		267.2
(0.1)
P 		293.3
(1.7)
P 		97
C 261.9
(2.8)
P 		223.4
(1.2)
P 		246.6
(2.1)
P 		123
(-3)
P 		189.7
(-0.2)
P 		267.9
(3)
P 		145
avr 239.6
(1.6) 		256.9
(3) 		241.3
(1.7) 		185.1
(-3) 		217.3
(-0.3) 		253.2
(2.7) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184941_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1808
Sequence Type Exemplar sequence
Representative Public ID M01E11.2 NCBI
Target Description M01E11.2 /REP_DB=WormBase Gene ID /WP=CE12290 /TR=P91401 /GB=AAB37831.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059233(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059233 NCBI Caenorhabditis elegans M01E11.2 (M01E11.2) mRNA, complete cds. 11/11 None
SNAP00000002375 ENSEMBL cdna:SNAP chromosome:CEL140:I:5579669:5581797:1 11/11 None
GENEFINDER00000002389 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5579669:5581797:1 11/11 None
M01E11.2.2 ENSEMBL cdna:known chromosome:CEL140:I:5579667:5581860:1 gene:M01E11.2 11/11 None
M01E11.2.1 ENSEMBL cdna:known chromosome:CEL140:I:5579669:5581860:1 gene:M01E11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5579668-5581797(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01E11.2
Entrez Gene 172214 Entrez gene
SwissProt P91401 EMBL-EBI
WormBase CE12290 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258478_AT nuclear associated protein-related / NAP-related at
CANINE:1587570_S_AT similar to beta catenin-like 1 cfa
CANINE:1592085_AT similar to beta catenin-like 1 cfa
CANINE_2:CFA.19986.1.S1_S_AT similar to beta catenin-like 1 cfa
CANINE_2:CFA.367.1.A1_A_AT similar to beta catenin-like 1 cfa
CANINE_2:CFA.367.2.A1_S_AT similar to beta catenin-like 1 cfa
DROSOPHILA_2:1628505_AT dm
DROSGENOME1:154969_AT dm
CHICKEN:GGA.6166.2.S1_S_AT catenin, beta like 1 gga
CHICKEN:GGAAFFX.13139.1.S1_S_AT catenin, beta like 1 gga
HG-U133_PLUS_2:221021_S_AT catenin, beta like 1 hs
HG-U133A:221021_S_AT catenin, beta like 1 hs
HG-FOCUS:221021_S_AT catenin, beta like 1 hs
HG-U133A_2:221021_S_AT catenin, beta like 1 hs
U133_X3P:G13549248_3P_X_AT catenin, beta like 1 hs
U133_X3P:G13549248_3P_S_AT catenin, beta like 1 hs
U133_X3P:221021_3P_S_AT catenin, beta like 1 hs
HG-U95C:63398_AT catenin, beta like 1 hs
HG-U95B:47061_AT Catenin, beta like 1 hs
HG-U95D:86605_AT Catenin, beta like 1 hs
HG-U95D:89688_R_AT Catenin, beta like 1 hs
HG-U95D:90248_AT Catenin, beta like 1 hs
HU35KSUBA:AA130220_AT Catenin, beta like 1 hs
HU35KSUBC:RC_AA458464_AT Catenin, beta like 1 hs
HU35KSUBD:RC_AA521196_AT Catenin, beta like 1 hs
MG-U74BV2:113657_AT catenin, beta like 1 mm
MG-U74BV2:164958_F_AT catenin, beta like 1 mm
MOE430A:1448582_AT catenin, beta like 1 mm
MOUSE430A_2:1448582_AT catenin, beta like 1 mm
MOUSE430_2:1448582_AT catenin, beta like 1 mm
MG-U74CV2:171213_I_AT Catenin, beta like 1 (Ctnnbl1), mRNA mm
MU19KSUBB:TC31729_AT Catenin, beta like 1 (Ctnnbl1), mRNA mm
MU19KSUBB:TC32402_AT Catenin, beta like 1 (Ctnnbl1), mRNA mm
RG-U34B:RC_AI059023_AT beta catenin-like 1 rn
RG-U34B:RC_AI058714_S_AT beta catenin-like 1 rn
RAE230A:1371633_AT beta catenin-like 1 rn
RAT230_2:1371633_AT beta catenin-like 1 rn
RAE230A:1389948_AT Beta catenin-like 1 rn
RAT230_2:1389948_AT Beta catenin-like 1 rn
RAE230B:1392380_AT Beta catenin-like 1 rn
RAT230_2:1392380_AT Beta catenin-like 1 rn
RG-U34B:RC_AA924818_AT Beta catenin-like 1 rn
RG-U34A:RC_AI638952_AT Beta catenin-like 1 rn
Protein Similarities
Method ID Description E-Value
blast AAB37831 Hypothetical protein M01E11.2 [Caenorhabditis elegans] ref|NP_491634.1| M01E11.2 [Caenorhabditis elegans] 0.0
blast CAE68915 Hypothetical protein CBG14894 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:184941_AT
gaaagttctgaaccatgcaacatcaggagacgagggaatcgaaaattgcaataaacttgt
cgaaatgctcggattgagaacaattttcccgttattcatgagaacaccttcaaagacaaa
aagaaaggatacgacacctgatgaacatgaagaacacgtttgtacgattctctcttcact
gctggcagcatgttcggagaaccaccgtcaacgaattgttcaaaaatttgttgagcacga
acatgagaaagtggacagagctgtggagctatttttgaagtacaaagaaaaagttcaacg
atttgaattgaaaaagaagcgtcaatcacaagaagctggaacatcagaagatgatgatcc
agatcgagcatatttggataaactagacaatggtctctacacgcttcaacgtcttactct
tatactcggtgaagtggcagttggtgttgaatcggctcgtctcagagagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGTTCTGAACCATGCAACATCA 181 359 1023 Antisense
GAGAACAATTTTCCCGTTATTCATG 490 391 1098 Antisense
ACACGTTTGTACGATTCTCTCTTCA 661 109 1176 Antisense
TCTCTCTTCACTGCTGGCAGCATGT 231 611 1191 Antisense
GCAGCATGTTCGGAGAACCACCGTC 67 311 1207 Antisense
GAACCACCGTCAACGAATTGTTCAA 556 343 1221 Antisense
TAGACAATGGTCTCTACACGCTTCA 286 653 1406 Antisense
TACACGCTTCAACGTCTTACTCTTA 595 641 1420 Antisense
AACGTCTTACTCTTATACTCGGTGA 364 143 1430 Antisense
GCAGTTGGTGTTGAATCGGCTCGTC 306 311 1459 Antisense
GTTGAATCGGCTCGTCTCAGAGAGG 479 437 1468 Antisense
Sequence Source Affymetrix Proprietary Database