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[184940_at]

Description F35F10.1 /REP_DB=WormBase Gene ID /WP=CE09926 /TR=Q9GYT3 /GB=AAF99930.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 39.9
(-3)
A 		51.9
(-1.8)
A 		101
(3)
P 		86.9
(1.6)
A 		61
B 36.5
(-1.7)
A 		46.3
(1.2)
A 		52.7
(3)
A 		31.8
(-3)
A 		21
C 37.9
(-1.5)
A 		70.5
(3)
A 		46.1
(-0.4)
P 		27.3
(-3)
A 		43
avr 38.1
(-3) 		56.2
(0.8) 		66.6
(3) 		48.7
(-0.8) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 36.9
(1.9)
A 		14
(-1.3)
A 		45
(3)
A 		29.2
(0.8)
A 		2.6
(-2.9)
A 		1.6
(-3)
A 		43
B 50.7
(3)
A 		40.5
(1.6)
A 		24
(-0.7)
A 		41.8
(1.8)
A 		48.5
(2.7)
A 		7.3
(-3)
A 		43
C 36.4
(2.3)
A 		34.9
(2)
A 		40.1
(3)
A 		21.1
(-0.7)
A 		9.2
(-3)
A 		20.8
(-0.7)
A 		31
avr 41.3
(3) 		29.8
(0.8) 		36.4
(2.1) 		30.7
(1) 		20.1
(-1.1) 		9.9
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 14.5
(-1.7)
A 		11.3
(-3)
A 		26.4
(3)
P 		12.7
(-2.4)
A 		15
B 11.6
(2.3)
A 		11.4
(2.1)
A 		12.2
(3)
A 		6.8
(-3)
A 		5
C 12.5
(0)
A 		20.3
(3)
A 		16.1
(1.4)
P 		4.6
(-3)
A 		16
avr 12.9
(-0.1) 		14.3
(0.7) 		18.2
(3) 		8
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 6.8
(1.1)
A 		5
(-0.1)
A 		9.8
(3)
A 		7.4
(1.5)
A 		0.8
(-2.7)
A 		0.4
(-3)
A 		9
B 17.7
(2.3)
A 		13.5
(0.8)
A 		5.8
(-1.9)
A 		11.1
(-0)
A 		19.7
(3)
A 		2.7
(-3)
A 		17
C 13.5
(3)
A 		10.7
(1.4)
A 		10.2
(1.1)
A 		4.3
(-2.3)
A 		3
(-3)
A 		7
(-0.7)
A 		11
avr 12.7
(3) 		9.7
(1.1) 		8.6
(0.4) 		7.6
(-0.3) 		7.8
(-0.2) 		3.4
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184940_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15203
Sequence Type Exemplar sequence
Representative Public ID F35F10.1 NCBI
Target Description F35F10.1 /REP_DB=WormBase Gene ID /WP=CE09926 /TR=Q9GYT3 /GB=AAF99930.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071517, NM_071544
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000011258 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3316211:3317853:1 None
NM_071544 NCBI Caenorhabditis elegans T20D4.13 (T20D4.13) mRNA, complete cds. None
SNAP00000011249 ENSEMBL cdna:SNAP chromosome:CEL140:V:3316211:3317579:1 None
GENEFINDER00000008868 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3391937:3393266:1 None
F35F10.1 ENSEMBL cdna:known chromosome:CEL140:V:3316210:3317853:1 gene:F35F10.1 None
T20D4.13 ENSEMBL cdna:known chromosome:CEL140:V:3391937:3393266:1 gene:T20D4.13 None
NM_071517 NCBI Caenorhabditis elegans F35F10.1 (F35F10.1) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3316210-3317853(+) 96.27 100.0
Public Domain and Genome References
Gene Title

Ensembl F35F10.1
T20D4.13
Entrez Gene 185308 Entrez gene
188649 Entrez gene
SwissProt Q9GYT3 EMBL-EBI
P91459 EMBL-EBI
WormBase CE36840 Wormbase
CE13804 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99930 Hypothetical protein F35F10.1 [Caenorhabditis elegans] ref|NP_503918.2| F35F10.1 [Caenorhabditis elegans] 1.0E-169
blast AAF99930 Hypothetical protein F35F10.1 [Caenorhabditis elegans] ref|NP_503918.2| F35F10.1 [Caenorhabditis elegans] 1.0E-127
blast AAF99930 Hypothetical protein F35F10.1 [Caenorhabditis elegans] ref|NP_503918.2| F35F10.1 [Caenorhabditis elegans] 1.0E-124
blast AAC27089 Hypothetical protein C04E12.4 [Caenorhabditis elegans] ref|NP_503936.2| C04E12.4 [Caenorhabditis elegans] 1.0E-112
blast AAC27089 Hypothetical protein C04E12.4 [Caenorhabditis elegans] ref|NP_503936.2| C04E12.4 [Caenorhabditis elegans] 1.0E-111
blast T33413 hypothetical protein C04E12.4 - Caenorhabditis elegans 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 7.9E-36
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 6.2E-10
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 3.3E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503945.1 2 31-53,141-163
T20D4.13 2 31-53,141-163
GENEFINDER00000008868 2 31-53,250-272
Sequence
Target Sequence 
>C. ELEGANS:184940_AT
cttgtctacaaccttctgaaacgtgtaaagacattccagtcggcggtgttctaactcttg
aaaagccagaatctgaaactctaactgtgggaataaagctgttcaagaatatacaacttt
ttggtcgcgatgagaagtgtacagagtgtggagagtttgagaggggattttcagtcaaag
ccttctggaattcgagaaatgtaaactgtcaaagtttagaatggtggggccgtattaata
gagaatctatagtccaactagtactactacacctccagccatctgaatttgcaattcata
ttttatttttaaaacttgtttcaataaatcaaaagatcgcatttgaaaaaaaaatgcgcc
gcaggctttttggcgtttacatggaagctctagtagccggtcaattgccgtttttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGTCTACAACCTTCTGAAACGTG 505 217 533 Antisense
TCGGCGGTGTTCTAACTCTTGAAAA 552 605 572 Antisense
CAAAGCCTTCTGGAATTCGAGAAAT 189 193 708 Antisense
GAATGGTGGGGCCGTATTAATAGAG 158 331 751 Antisense
GAGAATCTATAGTCCAACTAGTACT 444 389 773 Antisense
CAACTAGTACTACTACACCTCCAGC 83 189 787 Antisense
CACCTCCAGCCATCTGAATTTGCAA 478 201 802 Antisense
AATGCGCCGCAGGCTTTTTGGCGTT 216 167 885 Antisense
TTTGGCGTTTACATGGAAGCTCTAG 300 661 901 Antisense
GAAGCTCTAGTAGCCGGTCAATTGC 90 343 916 Antisense
GTAGCCGGTCAATTGCCGTTTTTCG 177 457 925 Antisense
Sequence Source Affymetrix Proprietary Database