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[184939_at]

Description F56E10.3 /REP_DB=WormBase Gene ID /WP=CE19903 /TR=Q9TXP1 /GB=AAC69222.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 2.4
(-3)
A 		9.7
(-2.3)
A 		4.5
(-2.8)
A 		61.7
(3)
A 		59
B 3.1
(-3)
A 		3.7
(-2.3)
A 		5.1
(-0.8)
A 		8.6
(3)
A 		6
C 3.4
(-2.7)
A 		3.5
(-2.7)
A 		2.3
(-3)
A 		26
(3)
A 		24
avr 3
(-3) 		5.6
(-2.5) 		4
(-2.8) 		32.1
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 3.3
(0.5)
A 		2.3
(-3)
A 		2.6
(-1.9)
A 		2.4
(-2.6)
A 		4
(3)
A 		2.4
(-2.6)
A 		2
B 2.9
(-1.7)
A 		3.6
(3)
A 		2.7
(-3)
A 		3.5
(2.3)
A 		3.5
(2.3)
A 		3.4
(1.7)
A 		1
C 2.1
(-3)
A 		4.4
(0.4)
A 		3.5
(-1)
A 		3
(-1.7)
A 		6.2
(3)
A 		2.3
(-2.7)
A 		4
avr 2.8
(-2.7) 		3.4
(-0.8) 		2.9
(-2.4) 		3
(-2.1) 		4.6
(3) 		2.7
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.9
(-3)
A 		2.1
(-2.1)
A 		1.2
(-2.8)
A 		9
(3)
A 		8
B 1
(-2.3)
A 		0.9
(-3)
A 		1.2
(-1)
A 		1.8
(3)
A 		1
C 1.1
(-2.5)
A 		1
(-2.7)
A 		0.8
(-3)
A 		4.4
(3)
A 		4
avr 1
(-3) 		1.3
(-2.6) 		1.1
(-2.9) 		5.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.8
(-1)
A 		0.6
(-3)
A 		0.6
(-3)
A 		1.2
(3)
A 		0.6
(-3)
A 		1
B 1
(-0.4)
A 		1.2
(1.3)
A 		0.7
(-3)
A 		0.9
(-1.3)
A 		1.4
(3)
A 		1.3
(2.1)
A 		1
C 0.8
(-2.1)
A 		1.3
(0)
A 		0.9
(-1.7)
A 		0.6
(-3)
A 		2
(3)
A 		0.8
(-2.1)
A 		1
avr 0.8
(-2.3) 		1.1
(0) 		0.7
(-3) 		0.7
(-3) 		1.5
(3) 		0.9
(-1.5) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184939_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15202
Sequence Type Exemplar sequence
Representative Public ID F56E10.3 NCBI
Target Description F56E10.3 /REP_DB=WormBase Gene ID /WP=CE19903 /TR=Q9TXP1 /GB=AAC69222.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070732(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070732 NCBI Caenorhabditis elegans F56E10.3 (F56E10.3) mRNA, complete cds. 11/11 None
F56E10.3 ENSEMBL cdna:known chromosome:CEL140:V:79190:86288:-1 gene:F56E10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024064 4/11 Cross Hyb Matching Probes None
GENEFINDER00000024065 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:79189-86288(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56E10.3
Entrez Gene 186393 Entrez gene
SwissProt Q9TXP1 EMBL-EBI
WormBase CE32192 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69222 Hypothetical protein F56E10.3 [Caenorhabditis elegans] ref|NP_503133.2| F56E10.3 [Caenorhabditis elegans] 0.0
blast CAE62361 Hypothetical protein CBG06442 [Caenorhabditis briggsae] 2.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR010473 EMBL-EBI Diaphanous GTPase-binding 1.6E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503133.2 3 2-24,88-105,193-215
F56E10.3 3 2-24,88-105,193-215
Sequence
Target Sequence 
>C. ELEGANS:184939_AT
gacgatcccggaaagcagcatgtgcatgatgacgtcatttttgctccagccccattggat
cctgcaaaaattgataaagattttgagtgccttgttaaagagctcggtttgaacgaggaa
aagcagcaagaaatgcacaattactcgatggaaaagaaaatgtcactactggtttcacaa
cattgtcttcaaacagaagacgcgtcacacttcattgggttcctcaaaaatttgcaacaa
tcattcgtgatcgactcgaacaccatcagacaacttcaggaactgaaagagccatcagaa
aattctctattagaagagcatgcatttgttccaaatttacttttacttataattcccaat
tttgacattttggaattaaaaaaaaatgttttcacgttaggcaggctnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnngccgaaaattgaccgttatagctacctcgagagtttcatc
tcctcctccgggctcaaattgctcacggagcttctaaatcagtgccaccagcagtatact
ttggagcagccagcactgttc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGATCCCGGAAAGCAGCATGTGC 234 379 910 Antisense
CAGCCCCATTGGATCCTGCAAAAAT 448 201 956 Antisense
GTCACTACTGGTTTCACAACATTGT 606 465 1071 Antisense
TCACACTTCATTGGGTTCCTCAAAA 118 625 1114 Antisense
GTGATCGACTCGAACACCATCAGAC 21 483 1156 Antisense
ATTGACCGTTATAGCTACCTCGAGA 346 3 1357 Antisense
AGCTACCTCGAGAGTTTCATCTCCT 82 79 1369 Antisense
TCCTCCGGGCTCAAATTGCTCACGG 325 593 1393 Antisense
ACGGAGCTTCTAAATCAGTGCCACC 126 97 1414 Antisense
CAGTGCCACCAGCAGTATACTTTGG 41 209 1429 Antisense
TACTTTGGAGCAGCCAGCACTGTTC 34 645 1446 Antisense
Sequence Source Affymetrix Proprietary Database