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[184938_at]

Description C17E7.10 /REP_DB=WormBase Gene ID /WP=CE08270 /TR=O16395 /GB=AAC24278.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 28.5
(3)
A 		11.1
(-1.5)
A 		5.2
(-3)
A 		7.3
(-2.5)
A 		23
B 2.6
(-3)
A 		19.3
(3)
A 		3.6
(-2.6)
A 		6.9
(-1.5)
A 		17
C 19
(2.6)
A 		5.2
(-3)
A 		14
(0.5)
A 		20.1
(3)
A 		15
avr 16.7
(3) 		11.9
(-0.2) 		7.6
(-3) 		11.4
(-0.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 13
(-1.3)
A 		20.2
(0.3)
A 		5.3
(-3)
A 		12.2
(-1.5)
A 		31.7
(2.8)
A 		32.4
(3)
A 		27
B 3.1
(-3)
A 		5.6
(-2.6)
A 		11.1
(-1.8)
A 		42.4
(3)
A 		9.7
(-2)
A 		6
(-2.6)
A 		39
C 25.6
(3)
A 		6.5
(-2.4)
A 		4.4
(-3)
A 		6.9
(-2.3)
A 		8.3
(-1.9)
A 		6.9
(-2.3)
A 		21
avr 13.9
(0.1) 		10.8
(-1.3) 		6.9
(-3) 		20.5
(3) 		16.6
(1.3) 		15.1
(0.6) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.4
(3)
A 		2.4
(-2.2)
A 		1.4
(-2.8)
A 		1.1
(-3)
A 		9
B 0.8
(-3)
A 		4.8
(3)
A 		0.8
(-3)
A 		1.5
(-2)
A 		4
C 6.3
(3)
A 		1.5
(-3)
A 		4.9
(1.3)
A 		3.4
(-0.6)
A 		5
avr 5.8
(3) 		2.9
(-1.6) 		2.4
(-2.4) 		2
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.4
(-2.1)
A 		7.2
(1.3)
A 		1.2
(-3)
A 		3.1
(-1.6)
A 		9.6
(3)
A 		7.9
(1.8)
A 		8
B 1.1
(-3)
A 		1.9
(-2.5)
A 		2.7
(-2)
A 		11.2
(3)
A 		3.9
(-1.3)
A 		2.2
(-2.3)
A 		10
C 9.5
(3)
A 		2
(-2.4)
A 		1.1
(-3)
A 		1.4
(-2.8)
A 		2.7
(-1.9)
A 		2.3
(-2.1)
A 		8
avr 4.3
(1.2) 		3.7
(0.2) 		1.7
(-3) 		5.2
(2.7) 		5.4
(3) 		4.1
(0.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184938_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15351
Sequence Type Exemplar sequence
Representative Public ID C17E7.10 NCBI
Target Description C17E7.10 /REP_DB=WormBase Gene ID /WP=CE08270 /TR=O16395 /GB=AAC24278.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071676(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071676 NCBI Caenorhabditis elegans C17E7.10 (C17E7.10) mRNA, complete cds. 11/11 None
GENEFINDER00000014096 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3897929:3902060:-1 11/11 None
C17E7.10 ENSEMBL cdna:known chromosome:CEL140:V:3898613:3900015:-1 gene:C17E7.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014092 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3898612-3900015(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17E7.10
Entrez Gene 182734 Entrez gene
SwissProt O16395 EMBL-EBI
WormBase CE35243 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24278 Hypothetical protein C17E7.10 [Caenorhabditis elegans] ref|NP_504077.2| C17E7.10 [Caenorhabditis elegans] 0.0
blast AAC24279 Seven tm receptor protein 229 [Caenorhabditis elegans] ref|NP_504078.1| Seven TM Receptor family member (str-229) [Caenorhabditis elegans] 1.0E-154
blast CAB60543 Hypothetical protein Y73F8A.18 [Caenorhabditis elegans] ref|NP_502853.1| Y73F8A.18 [Caenorhabditis elegans] 1.0E-101
blast CAB60543 Hypothetical protein Y73F8A.18 [Caenorhabditis elegans] ref|NP_502853.1| Y73F8A.18 [Caenorhabditis elegans] 1.0E-100
blast CAB07359 Hypothetical protein F11A5.7 [Caenorhabditis elegans] ref|NP_507087.2| F11A5.7 [Caenorhabditis elegans] 5.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 5.5E-6
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.6E-23
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.5E-5
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 5.5E-6
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.6E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000014096 4 28-50,63-85,136-158,186-208
Sequence
Target Sequence 
>C. ELEGANS:184938_AT
aacgtgcagcacggtgtgctccgatctacagataggggaagattgtgatctgaccgaagc
acagttgacatctgcatttttgaatatgaaacgtctgattggaaatattttcgtggtgag
cacaaaattccgaagcggaagtttccttgctggtttggaatctatagagtgcatcacaac
taatgagaaaaatctctgcatgtctcctagtctatgccagaaagtatttggtgacgtgga
agttggtccgaatactaacctagactccattaaaatgatcgaaatcattttcgggagtct
catcataaatgggactaacgtgaccgacttcaactttttggaaaacctgaaatacgtggc
atcgttcactgctgacaaatccggtatcatcgtggaaaacaaccctaatttgcagaatat
atcatttccaaaattgaagcgagttcgagcgagcaatcccgccacaatagtatttgataa
aaacaataaatacctgagtttggatgtggatagctgtaacggattgaaaaatgctctggg
aattactaccgactggtcgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGTGCAGCACGGTGTGCTCCGAT 580 143 171 Antisense
GAAAAATCTCTGCATGTCTCCTAGT 678 355 357 Antisense
CATGTCTCCTAGTCTATGCCAGAAA 498 209 369 Antisense
GGTCCGAATACTAACCTAGACTCCA 634 495 415 Antisense
GAAATCATTTTCGGGAGTCTCATCA 233 363 451 Antisense
AATGGGACTAACGTGACCGACTTCA 243 161 478 Antisense
GAAATACGTGGCATCGTTCACTGCT 287 363 519 Antisense
GTTCACTGCTGACAAATCCGGTATC 621 443 534 Antisense
AGCGAGTTCGAGCGAGCAATCCCGC 346 81 608 Antisense
AGCAATCCCGCCACAATAGTATTTG 140 75 622 Antisense
TGGGAATTACTACCGACTGGTCGCC 386 551 707 Antisense
Sequence Source Affymetrix Proprietary Database