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[184937_at] 7TM chemoreceptor, str family

Description Y9C9A.11 /REP_DB=WormBase Gene ID /WP=CE25646 /TR=Q9N2T6 /GB=AAF60935.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 19      6grp_cgc > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 10
(-1.9)
A 		1.9
(-2.9)
A 		1.4
(-3)
A 		49.2
(3)
A 		48
B 26.2
(3)
A 		22
(2)
P 		1.3
(-3)
A 		11.7
(-0.5)
A 		25
C 2.5
(-2.9)
A 		27.8
(-0.3)
A 		1.4
(-3)
A 		60.2
(3)
P 		59
avr 12.9
(-1.2) 		17.2
(-0.6) 		1.4
(-3) 		40.4
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 22.9
(3)
A 		22.8
(3)
A 		19.5
(2.1)
A 		0.6
(-3)
A 		20.6
(2.4)
A 		0.7
(-3)
A 		22
B 25.1
(3)
A 		15.8
(0.6)
A 		2.2
(-2.8)
A 		19.8
(1.7)
A 		1.4
(-3)
A 		1.6
(-2.9)
A 		24
C 9.3
(-0.7)
A 		23.2
(3)
P 		2.7
(-2.5)
A 		15
(0.8)
A 		1.3
(-2.9)
A 		0.9
(-3)
A 		22
avr 19.1
(2.5) 		20.6
(3) 		8.1
(-0.8) 		11.8
(0.3) 		7.8
(-0.9) 		1.1
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.6
(-0.2)
A 		0.4
(-3)
A 		0.4
(-3)
A 		7.2
(3)
A 		7
B 8.4
(3)
A 		5.4
(0.8)
P 		0.3
(-3)
A 		2.5
(-1.4)
A 		8
C 0.8
(-2.8)
A 		8
(1.6)
A 		0.5
(-3)
A 		10.2
(3)
P 		10
avr 4.3
(0.8) 		4.6
(1.1) 		0.4
(-3) 		6.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 4.2
(0)
A 		8.1
(3)
A 		4.2
(0)
A 		0.2
(-3)
A 		6.2
(1.6)
A 		0.2
(-3)
A 		8
B 8.7
(3)
A 		5.2
(0.4)
A 		0.5
(-3)
A 		5.3
(0.5)
A 		0.6
(-2.9)
A 		0.6
(-2.9)
A 		8
C 3.4
(-0.3)
A 		7.1
(3)
P 		0.7
(-2.6)
A 		3
(-0.6)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		7
avr 5.4
(1.7) 		6.8
(3) 		1.8
(-1.7) 		2.8
(-0.8) 		2.4
(-1.1) 		0.4
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184937_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10951
Sequence Type Exemplar sequence
Representative Public ID Y9C9A.11 NCBI
Target Description Y9C9A.11 /REP_DB=WormBase Gene ID /WP=CE25646 /TR=Q9N2T6 /GB=AAF60935.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068272(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068272 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-156) (str-156) mRNA, complete cds. 11/11 None
SNAP00000021389 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4914075:4914856:1 9/11 None
GENEFINDER00000021419 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4913387:4914856:1 11/11 None
Y9C9A.11 ENSEMBL cdna:known chromosome:CEL140:IV:4913387:4914856:1 gene:Y9C9A.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4913392-4914862(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-156
Ensembl Y9C9A.11
Entrez Gene 189416 Entrez gene
SwissProt Q9N2T6 EMBL-EBI
WormBase CE38253 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500673 Seven TM Receptor family member (str-156) [Caenorhabditis elegans] gb|AAF60935.2| Seven tm receptor protein 156 [Caenorhabditis elegans] 1.0E-168
blast NP_500674 Seven TM Receptor family member (str-155) [Caenorhabditis elegans] gb|AAF60934.1| Seven tm receptor protein 155 [Caenorhabditis elegans] 1.0E-143
blast NP_500673 Seven TM Receptor family member (str-156) [Caenorhabditis elegans] gb|AAF60935.2| Seven tm receptor protein 156 [Caenorhabditis elegans] 1.0E-142
blast AAF39845 Seven tm receptor protein 267 [Caenorhabditis elegans] ref|NP_503699.1| Seven TM Receptor family member (str-154) [Caenorhabditis elegans] gb|AAF60586.1| Seven tm receptor protein 154 [Caenorhabditis elegans] 1.0E-122
blast NP_500674 Seven TM Receptor family member (str-155) [Caenorhabditis elegans] gb|AAF60934.1| Seven tm receptor protein 155 [Caenorhabditis elegans] 1.0E-119
blast AAF39845 Seven tm receptor protein 267 [Caenorhabditis elegans] ref|NP_503699.1| Seven TM Receptor family member (str-154) [Caenorhabditis elegans] gb|AAF60586.1| Seven tm receptor protein 154 [Caenorhabditis elegans] 1.0E-102
blast NP_500673 Seven TM Receptor family member (str-156) [Caenorhabditis elegans] gb|AAF60935.2| Seven tm receptor protein 156 [Caenorhabditis elegans] 3.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.2E-7
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.2E-7
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.4E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500673.2 7 10-32,45-67,91-113,134-156,202-224,252-274,284-306
Y9C9A.11 6 13-32,56-78,99-121,167-189,217-239,249-271
SNAP00000021389 3 56-78,106-128,138-160
GENEFINDER00000021419 7 10-32,45-67,91-113,134-156,202-224,252-274,284-306
Sequence
Target Sequence 
>C. ELEGANS:184937_AT
ggattcttttatcaattctctgtggaatcatgacagggttcatgttctacgcaataggtt
ctcgtcaagaaatctcacagggtttgagagaaaatttggaaaccatgtatgacttggata
taaatcaaacaatatattatgtatttttgtattggcaacctaacgatggaagtcaatatt
ttacagcaagagatattatggcaaatatggggataaccatcttgatgatgattcctattc
ttctcatcgtctttttcggaacaaagacttatcgaaaagtcaagaatctgacaactcatg
gaaaaagtgaatactcaaagcggcttcaaatgcaactttacaaagctcttgtcgcacaga
taattattccatctgttttcctgtttctcccgactttattaattgctgcaggtccacttt
tcaagcttaatattccatgggctagtcttccattatctattttattttcaattttctcag
tgatggattctattag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTCTTTTATCAATTCTCTGTGG 510 509 317 Antisense
ATCAATTCTCTGTGGAATCATGACA 680 25 327 Antisense
TGACAGGGTTCATGTTCTACGCAAT 288 571 347 Antisense
GTTCTACGCAATAGGTTCTCGTCAA 642 443 360 Antisense
TTCTCGTCAAGAAATCTCACAGGGT 248 693 375 Antisense
GGAAACCATGTATGACTTGGATATA 557 527 414 Antisense
GTATTGGCAACCTAACGATGGAAGT 630 451 465 Antisense
GGAAGTCAATATTTTACAGCAAGAG 33 533 484 Antisense
ATATGGGGATAACCATCTTGATGAT 617 21 521 Antisense
CTTGATGATGATTCCTATTCTTCTC 189 219 537 Antisense
TTTTCTCAGTGATGGATTCTATTAG 502 671 788 Antisense
Sequence Source Affymetrix Proprietary Database