[Home] | [Total List]

[184936_at]

Description K04F1.13 /REP_DB=WormBase Gene ID /WP=CE19964 /TR=Q9TXL8 /GB=AAC78172.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 14      6grp_total > 51      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 43.7
(-3)
M 		65.2
(-0.9)
A 		45.3
(-2.8)
P 		104
(3)
P 		60
B 25.7
(-2.8)
P 		47.4
(1.3)
P 		56.5
(3)
P 		24.6
(-3)
A 		32
C 27.8
(-0.5)
P 		32.6
(1.3)
P 		20.9
(-3)
P 		37.2
(3)
A 		16
avr 32.4
(-3) 		48.4
(1.2) 		40.9
(-0.8) 		55.3
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 44.9
(3)
A 		30.1
(-1.1)
P 		32.8
(-0.3)
P 		29
(-1.4)
A 		36.9
(0.8)
A 		23
(-3)
A 		22
B 19.2
(-2.4)
A 		35.5
(-0.4)
P 		63.2
(3)
P 		15.8
(-2.8)
A 		22.7
(-1.9)
A 		14.1
(-3)
A 		49
C 21.5
(-1.7)
P 		25.6
(-1.3)
P 		31.1
(-0.8)
A 		69.2
(3)
P 		32.1
(-0.7)
P 		8.9
(-3)
A 		60
avr 28.5
(-0.1) 		30.4
(0.3) 		42.4
(3) 		38
(2) 		30.6
(0.4) 		15.3
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 15.9
(3)
M 		14.1
(0.4)
A 		11.8
(-3)
P 		15.2
(2)
P 		4
B 8.2
(-0.7)
P 		11.7
(1.9)
P 		13.1
(3)
P 		5.2
(-3)
A 		8
C 9.2
(2.6)
P 		9.4
(3)
P 		7.3
(-1.1)
P 		6.3
(-3)
A 		3
avr 11.1
(1.7) 		11.7
(3) 		10.7
(0.9) 		8.9
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 8.3
(-0.1)
A 		10.7
(2.6)
P 		7.1
(-1.4)
P 		7.4
(-1)
A 		11.1
(3)
A 		5.6
(-3)
A 		6
B 6.7
(-1.7)
A 		11.8
(1.1)
P 		15.4
(3)
P 		4.2
(-3)
A 		9.2
(-0.3)
A 		5.3
(-2.4)
A 		11
C 8
(-0.2)
P 		7.8
(-0.4)
P 		7.9
(-0.3)
A 		13.9
(3)
P 		10.4
(1.1)
P 		3
(-3)
A 		11
avr 7.7
(0.3) 		10.1
(2.9) 		10.1
(2.9) 		8.5
(1.2) 		10.2
(3) 		4.6
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184936_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15344
Sequence Type Exemplar sequence
Representative Public ID K04F1.13 NCBI
Target Description K04F1.13 /REP_DB=WormBase Gene ID /WP=CE19964 /TR=Q9TXL8 /GB=AAC78172.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071068(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071068 NCBI Caenorhabditis elegans K04F1.13 (K04F1.13) mRNA, complete cds. 11/11 None
SNAP00000011959 ENSEMBL cdna:SNAP chromosome:CEL140:V:1651992:1654273:1 11/11 None
GENEFINDER00000011975 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1651174:1654273:1 11/11 None
K04F1.13 ENSEMBL cdna:known chromosome:CEL140:V:1651174:1654273:1 gene:K04F1.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1651243-1654273(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04F1.13
Entrez Gene 186999 Entrez gene
SwissProt Q9TXL8 EMBL-EBI
WormBase CE36878 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC78172 Hypothetical protein K04F1.13 [Caenorhabditis elegans] ref|NP_503469.2| K04F1.13 [Caenorhabditis elegans] 0.0
blast AAQ62448 Hypothetical protein K04F1.14b [Caenorhabditis elegans] ref|NP_001024029.1| K04F1.14b [Caenorhabditis elegans] 1.0E-108
blast NP_494508 F14D2.6 [Caenorhabditis elegans] gb|AAB94960.1| Hypothetical protein F14D2.6 [Caenorhabditis elegans] 3.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 9.9E-8
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 7.9E-36
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.5E-4
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 7.9E-36
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.5E-4
Sequence
Target Sequence 
>C. ELEGANS:184936_AT
gaattgtcagcacattgttggcgatattgtgataaatgataaaaatgagaaagaaattga
aaaactcaacaaagctatcataatctatggatcgtttactattgaggatactaaatattt
ggaagatttaacctttttaaaacatctagaacaagttgttggcttaaaaatggattcggg
tccaattgtccgattcctgtcaaatagtgcacttaaaaatgttaaatttccaataatgaa
gagacccccattccaaataaatcatgagccggttattgagattaatggaaacttggaaat
tatatttaacaatgtacaagaatgtaaattgcatgaagaacaaactcagtctcgagtaaa
atacaatggagacgaatgtgatgctctggaagaactttcatttcctagtcaatcaagtcc
aactcagtcatttgattatgtagaatcatcaactgttgaaaagtttgaagaagagtctga
aataactagtggaaccatggaaaatgaattgagcacaggcacaagtgtgattgcgataac
acacagctcagtggagccaacaactaaatcgggaaacggagcccaaattcttatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTGTCAGCACATTGTTGGCGAT 455 323 996 Antisense
ATCTATGGATCGTTTACTATTGAGG 121 27 1078 Antisense
GATTCGGGTCCAATTGTCCGATTCC 134 433 1168 Antisense
GTCCGATTCCTGTCAAATAGTGCAC 197 477 1183 Antisense
GAGACCCCCATTCCAAATAAATCAT 295 393 1236 Antisense
GAAGAACTTTCATTTCCTAGTCAAT 422 339 1384 Antisense
GTCAATCAAGTCCAACTCAGTCATT 485 463 1403 Antisense
GAGCACAGGCACAAGTGTGATTGCG 662 389 1506 Antisense
GTGATTGCGATAACACACAGCTCAG 597 483 1522 Antisense
GTGGAGCCAACAACTAAATCGGGAA 330 489 1546 Antisense
GGAAACGGAGCCCAAATTCTTATCG 408 511 1567 Antisense
Sequence Source Affymetrix Proprietary Database