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[184935_at]

Description C34D4.10 /REP_DB=WormBase Gene ID /WP=CE17504 /TR=Q18440 /GB=AAB00692.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 24.8
(-3)
A 		53.6
(3)
A 		40.4
(0.2)
A 		29.2
(-2.1)
A 		29
B 3.6
(-3)
A 		19.9
(0.4)
A 		32.5
(3)
A 		21.2
(0.7)
A 		29
C 31.6
(1.2)
A 		7.1
(-3)
A 		34.8
(1.7)
A 		42.2
(3)
A 		35
avr 20
(-3) 		26.9
(-0.4) 		35.9
(3) 		30.9
(1.1) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 30.2
(-1.3)
A 		1.5
(-3)
A 		54.9
(0.1)
A 		30.5
(-1.3)
A 		92.9
(2.3)
A 		104.1
(3)
P 		103
B 19.5
(-3)
A 		29.7
(-2)
A 		42.1
(-0.9)
A 		51.1
(-0)
A 		71.9
(1.9)
P 		83.6
(3)
P 		64
C 6.8
(-3)
A 		23.9
(-1.9)
A 		12.5
(-2.6)
A 		74.1
(1.2)
A 		82.3
(1.8)
M 		102
(3)
P 		95
avr 18.8
(-3) 		18.4
(-3) 		36.5
(-1.6) 		51.9
(-0.4) 		82.4
(1.9) 		96.6
(3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 9
(0.9)
A 		11.6
(3)
A 		10.6
(2.2)
A 		4.3
(-3)
A 		7
B 1.2
(-3)
A 		4.9
(0.5)
A 		7.5
(3)
A 		4.5
(0.1)
A 		6
C 10.5
(2)
A 		2
(-3)
A 		12.1
(3)
A 		7.1
(0)
A 		10
avr 6.9
(-1) 		6.2
(-1.9) 		10.1
(3) 		5.3
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 5.6
(-1.9)
A 		0.5
(-3)
A 		12
(-0.5)
A 		7.7
(-1.4)
A 		28
(3)
A 		25.3
(2.4)
P 		28
B 6.8
(-3)
A 		9.9
(-2.2)
A 		10.2
(-2.2)
A 		13.5
(-1.4)
A 		29.2
(2.5)
P 		31.2
(3)
P 		24
C 2.5
(-3)
A 		7.3
(-2.1)
A 		3.2
(-2.9)
A 		14.9
(-0.6)
A 		26.6
(1.6)
M 		34.1
(3)
P 		32
avr 5
(-3) 		5.9
(-2.8) 		8.5
(-2.2) 		12
(-1.3) 		27.9
(2.5) 		30.2
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184935_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10163
Sequence Type Exemplar sequence
Representative Public ID C34D4.10 NCBI
Target Description C34D4.10 /REP_DB=WormBase Gene ID /WP=CE17504 /TR=Q18440 /GB=AAB00692.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068714(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068714 NCBI Caenorhabditis elegans C34D4.10 (C34D4.10) mRNA, complete cds. 11/11 None
SNAP00000003794 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7119988:7121396:-1 11/11 None
GENEFINDER00000003817 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7119988:7121396:-1 11/11 None
C34D4.10 ENSEMBL cdna:known chromosome:CEL140:IV:7119988:7121396:-1 gene:C34D4.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7119993-7121402(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34D4.10
Entrez Gene 183208 Entrez gene
SwissProt Q18440 EMBL-EBI
WormBase CE17504 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00692 Hypothetical protein C34D4.10 [Caenorhabditis elegans] ref|NP_501115.1| C34D4.10 [Caenorhabditis elegans] 0.0
blast CAE61808 Hypothetical protein CBG05775 [Caenorhabditis briggsae] 3.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501115.1 1 16-35
C34D4.10 1 16-35
SNAP00000003794 1 16-35
GENEFINDER00000003817 1 16-35
Sequence
Target Sequence 
>C. ELEGANS:184935_AT
gcgatgatttcggagacttctactatttgggtcaagaggtaatgaagttggatagaaatg
tcgagtgtgtgtgcggtggaatttcgtatcaacgtcccgaatacctgcaactgagccaag
acaacattttctggccagtcggtgttgaaacctgcgatattggaatcatgagaagtcgta
ctgactttaaaccattgggatctctagacccattgcttgattacccagctctcgctccaa
tctgtattcgtccagaagtgccaagaatctcatccgatgctgaacatgttaccaacaagt
cgatcggagtgaacaaattcgatgcaaagcttttcacagcttccaagatgaacgagacag
ttatgctggatttgaaagccgcaaaaccaatggcgatgcaggattggaataacttggaga
aggaggatatcaatgggatctacaagtttccattcagcggaagtgaagagctgagccact
attttggagaaaacgattttcaaaaaatcctcgaccagagaggttacgacaatatcatcc
caatgttcgtccatggacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGATGATTTCGGAGACTTCTACTA 292 291 509 Antisense
GTGGAATTTCGTATCAACGTCCCGA 425 471 584 Antisense
TCCCGAATACCTGCAACTGAGCCAA 582 595 603 Antisense
GGCCAGTCGGTGTTGAAACCTGCGA 624 541 641 Antisense
TCTAGACCCATTGCTTGATTACCCA 288 615 711 Antisense
TCGCTCCAATCTGTATTCGTCCAGA 678 597 740 Antisense
AGTGCCAAGAATCTCATCCGATGCT 126 61 765 Antisense
AATTCGATGCAAAGCTTTTCACAGC 536 177 824 Antisense
GGATCTACAAGTTTCCATTCAGCGG 503 511 944 Antisense
GAGGTTACGACAATATCATCCCAAT 616 401 1028 Antisense
CATCCCAATGTTCGTCCATGGACGC 671 211 1044 Antisense
Sequence Source Affymetrix Proprietary Database