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[184934_s_at]

Description H06H21.9 /REP_DB=WormBase Gene ID /WP=CE17967 /TR=Q9TXV1 /GB=AAK29848.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 51      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 25.2
(1.1)
A 		33.3
(3)
A 		7.8
(-3)
A 		11.4
(-2.2)
A 		26
B 47.6
(2.3)
A 		39.2
(1.2)
A 		53.3
(3)
A 		6.7
(-3)
A 		47
C 11.9
(-3)
A 		32.3
(0.1)
A 		34.9
(0.5)
A 		51.4
(3)
A 		40
avr 28.2
(-0.4) 		34.9
(3) 		32
(1.5) 		23.2
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 13.1
(-3)
A 		20.2
(-2.6)
A 		43.3
(-1.2)
A 		14.3
(-2.9)
A 		86.8
(1.3)
P 		116.4
(3)
A 		103
B 38.5
(-1.2)
A 		29.2
(-1.7)
A 		8.3
(-3)
A 		28.3
(-1.8)
A 		73.1
(1)
A 		106.4
(3)
P 		98
C 33.4
(-3)
A 		46.3
(-2)
A 		67.1
(-0.4)
A 		66.6
(-0.4)
A 		90.8
(1.5)
P 		110.3
(3)
P 		77
avr 28.3
(-3) 		31.9
(-2.7) 		39.6
(-2.2) 		36.4
(-2.4) 		83.6
(1) 		111
(3) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 9.2
(3)
A 		7.2
(1.4)
A 		2
(-2.8)
A 		1.7
(-3)
A 		8
B 15.2
(3)
A 		9.7
(0.6)
A 		12.3
(1.7)
A 		1.4
(-3)
A 		14
C 3.9
(-3)
A 		9.3
(1)
A 		12.1
(3)
A 		8.7
(0.5)
A 		8
avr 9.4
(3) 		8.7
(2.2) 		8.8
(2.3) 		3.9
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 2.4
(-3)
A 		7.2
(-1.9)
A 		9.4
(-1.4)
A 		3.6
(-2.7)
A 		26.2
(2.5)
P 		28.3
(3)
A 		26
B 13.4
(-1.2)
A 		9.7
(-1.8)
A 		2
(-3)
A 		7.5
(-2.1)
A 		29.7
(1.4)
A 		39.7
(3)
P 		38
C 12.4
(-3)
A 		14.1
(-2.6)
A 		17.1
(-1.8)
A 		13.4
(-2.8)
A 		29.4
(1.2)
P 		36.9
(3)
P 		25
avr 9.4
(-2.7) 		10.3
(-2.5) 		9.5
(-2.7) 		8.2
(-3) 		28.4
(1.5) 		35
(3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184934_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10559
Sequence Type Exemplar sequence
Representative Public ID H06H21.9 NCBI
Target Description H06H21.9 /REP_DB=WormBase Gene ID /WP=CE17967 /TR=Q9TXV1 /GB=AAK29848.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068253(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068253 NCBI Caenorhabditis elegans H06H21.9 (H06H21.9) mRNA, complete cds. 11/11 None
SNAP00000018258 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4825510:4827255:-1 11/11 None
GENEFINDER00000018266 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4825510:4827255:-1 11/11 None
H06H21.9 ENSEMBL cdna:known chromosome:CEL140:IV:4825510:4827271:-1 gene:H06H21.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4825515-4827261(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H06H21.9
Entrez Gene 177255 Entrez gene
SwissProt Q9TXV1 EMBL-EBI
WormBase CE17967 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29848 Hypothetical protein H06H21.9 [Caenorhabditis elegans] ref|NP_500654.1| H06H21.9 [Caenorhabditis elegans] 0.0
blast CAE66394 Hypothetical protein CBG11658 [Caenorhabditis briggsae] 1.0E-107
blast CAE66394 Hypothetical protein CBG11658 [Caenorhabditis briggsae] 1.0E-104
blast CAE66394 Hypothetical protein CBG11658 [Caenorhabditis briggsae] 1.0E-102
blast CAE70829 Hypothetical protein CBG17607 [Caenorhabditis briggsae] 4.0E-24
Sequence
Target Sequence 
>C. ELEGANS:184934_S_AT
tcttagccacacaggatcacaccatcgatttggccattctctaccaattcaaatacctgc
agcttggtctgaacgtgcagcaggtcgacagaaaagtggtggtcaactacactattccgg
attcagtttcacattgtagtttgaatattggtgaagctattattgctgttgatgataaac
caatcaacactctggcagataatcgtcaacgatttcgcgaaggatttgaggcgaatggat
ggattcgattgttggttgagtatccgaatacggatccaatcaaaaatatggttcggggac
agcttgcaaatgttatgagaactgccgaacgaccgcaatacttgctttgtggagatgtcc
gtaaatactttgtagaaggaattgaagctctgaaaaatggaaaagcgttggctcccattt
taaaagaggaagaagggccgggagaagttgggaagaagaagagtgatgcgaaagttacca
aaaaggacccggctgttggattcaacaacacaactgaagaattttttattccggcggaat
ggaactcgaagcttttcgtttggctcccgccgctgaagaccaaggtgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTAGCCACACAGGATCACACCAT 610 613 596 Antisense
TCACACCATCGATTTGGCCATTCTC 139 629 612 Antisense
GGCCATTCTCTACCAATTCAAATAC 466 539 627 Antisense
AATACCTGCAGCTTGGTCTGAACGT 337 173 647 Antisense
GTCTGAACGTGCAGCAGGTCGACAG 517 471 662 Antisense
TCAACTACACTATTCCGGATTCAGT 304 631 698 Antisense
AAACCAATCAACACTCTGGCAGATA 478 125 772 Antisense
AGAACTGCCGAACGACCGCAATACT 535 73 913 Antisense
AATACTTGCTTTGTGGAGATGTCCG 165 173 932 Antisense
GAACTCGAAGCTTTTCGTTTGGCTC 687 347 1137 Antisense
TCCCGCCGCTGAAGACCAAGGTGAC 279 595 1160 Antisense
Sequence Source Affymetrix Proprietary Database