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[184933_at]

Description Y116A8A.8 /REP_DB=WormBase Gene ID /WP=CE23311 /TR=Q9U2W5 /GB=CAB55160.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 53      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 93.4
(3)
P 		81.1
(2)
P 		32.5
(-1.9)
A 		18.6
(-3)
A 		75
B 88.7
(3)
P 		49.7
(0.3)
A 		47.1
(0.1)
A 		2.8
(-3)
A 		86
C 84.2
(3)
P 		76.3
(1.7)
A 		53.8
(-1.9)
A 		46.8
(-3)
A 		37
avr 88.8
(3) 		69
(1.2) 		44.5
(-1) 		22.7
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 76.7
(-0.4)
A 		109.3
(1.5)
P 		129.9
(2.7)
P 		135.6
(3)
P 		30.4
(-3)
A 		39
(-2.5)
A 		105
B 83.6
(-0.6)
P 		156.4
(3)
P 		100.1
(0.2)
P 		67.4
(-1.4)
P 		63.4
(-1.6)
P 		33.9
(-3)
M 		123
C 109.2
(0.8)
P 		141.2
(3)
P 		105
(0.6)
P 		112.3
(1.1)
P 		66.7
(-2)
P 		51.9
(-3)
A 		89
avr 89.8
(0.1) 		135.6
(3) 		111.7
(1.5) 		105.1
(1.1) 		53.5
(-2.2) 		41.6
(-3) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 34
(3)
P 		17.6
(-0.1)
P 		8.5
(-1.9)
A 		2.7
(-3)
A 		31
B 28.3
(3)
P 		12.3
(-0.5)
A 		10.9
(-0.8)
A 		0.6
(-3)
A 		28
C 27.9
(3)
P 		21.9
(1.2)
A 		18.8
(0.3)
A 		7.9
(-3)
A 		20
avr 30.1
(3) 		17.3
(0.1) 		12.7
(-1) 		3.7
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 14.1
(-2)
A 		38.9
(3)
P 		28.3
(0.9)
P 		34.4
(2.1)
P 		9.2
(-3)
A 		9.5
(-2.9)
A 		30
B 29.1
(-0.5)
P 		52.1
(3)
P 		24.3
(-1.2)
P 		17.9
(-2.2)
P 		25.8
(-1)
P 		12.6
(-3)
M 		40
C 40.5
(2.4)
P 		43.1
(3)
P 		26.7
(-0.8)
P 		22.6
(-1.8)
P 		21.6
(-2)
P 		17.4
(-3)
A 		26
avr 27.9
(-0.2) 		44.7
(3) 		26.4
(-0.5) 		25
(-0.8) 		18.9
(-1.9) 		13.2
(-3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184933_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8982
Sequence Type Exemplar sequence
Representative Public ID Y116A8A.8 NCBI
Target Description Y116A8A.8 /REP_DB=WormBase Gene ID /WP=CE23311 /TR=Q9U2W5 /GB=CAB55160.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070595(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070595 NCBI Caenorhabditis elegans Y116A8A.8 (Y116A8A.8) mRNA, complete cds. 11/11 None
GENEFINDER00000018659 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16830167:16832899:1 11/11 None
Y116A8A.8 ENSEMBL cdna:known chromosome:CEL140:IV:16831779:16832899:1 gene:Y116A8A.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018651 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16831784-16832905(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8A.8
Entrez Gene 178467 Entrez gene
SwissProt Q9U2W5 EMBL-EBI
WormBase CE23311 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55160 Hypothetical protein Y116A8A.8 [Caenorhabditis elegans] ref|NP_502996.1| Y116A8A.8 [Caenorhabditis elegans] 1.0E-180
blast NP_501134 C42D4.11 [Caenorhabditis elegans] gb|AAA83349.1| Hypothetical protein C42D4.11 [Caenorhabditis elegans] 1.0E-101
blast CAA22060 Hypothetical protein ZC15.2 [Caenorhabditis elegans] emb|CAB07710.1| Hypothetical protein ZC15.2 [Caenorhabditis elegans] ref|NP_507917.1| ZC15.2 [Caenorhabditis elegans] 7.0E-25
blast CAA22060 Hypothetical protein ZC15.2 [Caenorhabditis elegans] emb|CAB07710.1| Hypothetical protein ZC15.2 [Caenorhabditis elegans] ref|NP_507917.1| ZC15.2 [Caenorhabditis elegans] 1.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000018659 1 66-88
Sequence
Target Sequence 
>C. ELEGANS:184933_AT
aacaatacctccaatttgacgcagtataaatattcagcgcaaccttctgaggatggaaat
tttctacatttttcctacagtgctataaaaagttgtccttctgaatgggagccctttgac
agaatccgtggcggttggtgtattaaagtttttagacaaggtggtagtcatgatgatgca
catagagcttgtaaagaatataatgccgttttgactagactggaaacacctaaggaaatg
gagtatgtttggaacactgcttattccgtagaagctatatttcaaaaaccttcgtgggaa
gtatatctagaaactgtatggatagatggtgttagaaaaaatgaatgtcaagttcctaac
tggaaatcaatagagggttgtgatggtttggacggatttgaatttgaggataaatttata
tcgaagaaaggaggatacacttggtcggacaaaaatccagacaggttggataatgtccag
gattgtcttgtgttgtggatcaatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAATACCTCCAATTTGACGCAGT 129 135 307 Antisense
TATTCAGCGCAACCTTCTGAGGATG 168 661 337 Antisense
GTTGTCCTTCTGAATGGGAGCCCTT 581 437 398 Antisense
GGAGCCCTTTGACAGAATCCGTGGC 136 519 414 Antisense
GAATCCGTGGCGGTTGGTGTATTAA 370 327 428 Antisense
TAATGCCGTTTTGACTAGACTGGAA 586 635 507 Antisense
GGAACACTGCTTATTCCGTAGAAGC 625 527 557 Antisense
GAGGGTTGTGATGGTTTGGACGGAT 102 385 679 Antisense
AGGAGGATACACTTGGTCGGACAAA 346 55 735 Antisense
GGATAATGTCCAGGATTGTCTTGTG 291 511 774 Antisense
TTGTCTTGTGTTGTGGATCAATCCA 8 707 789 Antisense
Sequence Source Affymetrix Proprietary Database