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[184932_at]

Description R11G11.3 /REP_DB=WormBase Gene ID /WP=CE12744 /TR=O16959 /GB=AAC69078.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 21      6grp_total > 52      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 28.5
(-3)
A 		36.5
(-2.2)
A 		53.2
(-0.7)
A 		91.7
(3)
P 		63
B 36.7
(-2)
P 		52.9
(1.9)
P 		32.4
(-3)
P 		57.5
(3)
P 		25
C 45.7
(-1.2)
P 		69.2
(0)
P 		12
(-3)
A 		126.1
(3)
P 		114
avr 37
(-2.5) 		52.9
(-0.9) 		32.5
(-3) 		91.8
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 29.4
(0.3)
A 		18.5
(-2.1)
A 		41.5
(3)
P 		21.3
(-1.4)
A 		14.2
(-3)
A 		40.2
(2.7)
A 		27
B 38.3
(0.6)
M 		23.8
(-1.3)
A 		16.6
(-2.2)
A 		38.5
(0.7)
A 		56
(3)
P 		10.9
(-3)
A 		45
C 24.2
(-3)
A 		57.3
(3)
P 		55.3
(2.6)
P 		32.9
(-1.4)
A 		36
(-0.9)
A 		30.9
(-1.8)
A 		33
avr 30.6
(-1.1) 		33.2
(0.4) 		37.8
(3) 		30.9
(-0.9) 		35.4
(1.6) 		27.3
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.4
(-0.5)
A 		7.9
(-3)
A 		13.9
(3)
A 		13.4
(2.5)
P 		6
B 11.7
(1.5)
P 		13.1
(3)
P 		7.5
(-3)
P 		12.2
(2)
P 		6
C 15.1
(0.8)
P 		19.9
(2.5)
P 		4.2
(-3)
A 		21.3
(3)
P 		17
avr 12.4
(0.3) 		13.6
(1.3) 		8.5
(-3) 		15.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 5.4
(-1.8)
A 		6.6
(-0.5)
A 		9
(2.1)
P 		5.4
(-1.8)
A 		4.3
(-3)
A 		9.8
(3)
A 		6
B 13.3
(-0)
M 		7.9
(-1.7)
A 		4
(-3)
A 		10.2
(-1)
A 		22.7
(3)
P 		4.1
(-3)
A 		19
C 9
(-1.7)
A 		17.5
(3)
P 		14.1
(1.1)
P 		6.6
(-3)
A 		11.6
(-0.2)
A 		10.3
(-1)
A 		11
avr 9.2
(-1) 		10.7
(0.6) 		9
(-1.3) 		7.4
(-3) 		12.9
(3) 		8.1
(-2.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184932_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15326
Sequence Type Exemplar sequence
Representative Public ID R11G11.3 NCBI
Target Description R11G11.3 /REP_DB=WormBase Gene ID /WP=CE12744 /TR=O16959 /GB=AAC69078.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070834(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070834 NCBI Caenorhabditis elegans R11G11.3 (R11G11.3) mRNA, complete cds. 11/11 None
SNAP00000021491 ENSEMBL cdna:SNAP chromosome:CEL140:V:530742:531648:1 9/11 None
R11G11.3 ENSEMBL cdna:known chromosome:CEL140:V:530628:531853:1 gene:R11G11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021497 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:530627-531853(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R11G11.3
Entrez Gene 187823 Entrez gene
SwissProt O16959 EMBL-EBI
WormBase CE12744 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503235 R11G11.3 [Caenorhabditis elegans] gb|AAC69078.1| Hypothetical protein R11G11.3 [Caenorhabditis elegans] 1.0E-160
blast NP_503235 R11G11.3 [Caenorhabditis elegans] gb|AAC69078.1| Hypothetical protein R11G11.3 [Caenorhabditis elegans] 1.0E-109
blast CAE65493 Hypothetical protein CBG10463 [Caenorhabditis briggsae] 8.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503235.1 1 217-239
R11G11.3 1 217-239
Sequence
Target Sequence 
>C. ELEGANS:184932_AT
ggcacctgagcaaaggccagatcaattttcaaatagaaaatggaggaagcaaactgttca
gcttagtttcagcaaatgagactttggcagaagacctggctggtaaaaatatcggattta
aattcaatgaagattctgattttaagaatctgactgttcgaaatattcaaaatctgcgca
gcaacccaagaacaagttatatctacttccgacttccatacttgcatacacattccaaaa
tcgatgtggctacaagactgaaatttaaaccagttcgctcgaaacttcacaatttcaggt
ttaagttacaaagacctgcggagaatgattatgaatcatcaaaagaataccacgaaccgt
ttttgaaaagacctcccgatagaattccatatttgttcaatgcttccagtacttttttgt
atattgtttttcaaaatgatcttccaattgttatgggtgtctttactgtttccattttaa
atgttttaaaaaattttgaacaggaaaaattcaaaaaatcaaattttgaaataaacgacc
aaaaatatttgttcacaagttcctattttaattcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCACCTGAGCAAAGGCCAGATCAA 280 535 242 Antisense
AACTGTTCAGCTTAGTTTCAGCAAA 436 143 293 Antisense
GACTTTGGCAGAAGACCTGGCTGGT 625 371 321 Antisense
AAATCTGCGCAGCAACCCAAGAACA 160 119 411 Antisense
AAGTTATATCTACTTCCGACTTCCA 316 155 435 Antisense
GACTTCCATACTTGCATACACATTC 321 371 452 Antisense
AAACCAGTTCGCTCGAAACTTCACA 258 125 508 Antisense
AAGACCTCCCGATAGAATTCCATAT 46 153 609 Antisense
ATTTGTTCAATGCTTCCAGTACTTT 133 17 632 Antisense
TGGGTGTCTTTACTGTTTCCATTTT 640 553 695 Antisense
TTCACAAGTTCCTATTTTAATTCCT 546 683 793 Antisense
Sequence Source Affymetrix Proprietary Database