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[184931_at]

Description C33D12.2 /REP_DB=WormBase Gene ID /WP=CE04765 /TR=Q22904 /GB=AAK39203.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 41.8
(3)
A 		22.6
(-0.3)
A 		8.6
(-2.6)
A 		6.4
(-3)
A 		35
B 60.8
(3)
A 		54
(2.2)
A 		14.3
(-2.8)
A 		12.5
(-3)
A 		48
C 88.2
(2.7)
A 		11.4
(-2.8)
A 		8.3
(-3)
A 		92.7
(3)
A 		84
avr 63.6
(3) 		29.3
(-0.9) 		10.4
(-3) 		37.2
(0) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 5.5
(-2.8)
A 		51.7
(3)
A 		7
(-2.6)
A 		8.3
(-2.4)
A 		19.1
(-1.1)
A 		3.9
(-3)
A 		48
B 44.1
(3)
A 		18.5
(-0.9)
A 		12.3
(-1.8)
A 		36
(1.8)
A 		4.6
(-3)
A 		8.6
(-2.4)
A 		40
C 25.3
(3)
A 		16.5
(0.6)
A 		14.6
(0.1)
A 		5
(-2.5)
A 		3.3
(-3)
A 		11.1
(-0.9)
A 		22
avr 25
(1.9) 		28.9
(3) 		11.3
(-2) 		16.4
(-0.6) 		9
(-2.7) 		7.9
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 15.2
(3)
A 		4.9
(-1.3)
A 		2.2
(-2.5)
A 		0.9
(-3)
A 		14
B 19.4
(3)
A 		13.3
(0.8)
A 		3.3
(-2.8)
A 		2.7
(-3)
A 		17
C 29.2
(3)
A 		3.3
(-2.9)
A 		2.9
(-3)
A 		15.6
(-0.1)
A 		26
avr 21.3
(3) 		7.2
(-1.6) 		2.8
(-3) 		6.4
(-1.8) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1
(-3)
A 		18.4
(3)
A 		1.5
(-2.8)
A 		2.1
(-2.6)
A 		5.8
(-1.3)
A 		0.9
(-3)
A 		18
B 15.3
(3)
A 		6.1
(-1.1)
A 		3
(-2.5)
A 		9.5
(0.4)
A 		1.9
(-3)
A 		3.2
(-2.4)
A 		13
C 9.4
(3)
A 		5
(-0.1)
A 		3.7
(-1.1)
A 		1
(-3)
A 		1.1
(-2.9)
A 		3.7
(-1.1)
A 		8
avr 8.6
(2) 		9.8
(3) 		2.7
(-2.9) 		4.2
(-1.7) 		2.9
(-2.8) 		2.6
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184931_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18298
Sequence Type Exemplar sequence
Representative Public ID C33D12.2 NCBI
Target Description C33D12.2 /REP_DB=WormBase Gene ID /WP=CE04765 /TR=Q22904 /GB=AAK39203.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076120(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076120 NCBI Caenorhabditis elegans C33D12.2 (C33D12.2) mRNA, complete cds. 11/11 None
GENEFINDER00000019211 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3041969:3046386:-1 11/11 None
SNAP00000019204 ENSEMBL cdna:SNAP chromosome:CEL140:X:3041978:3045797:-1 11/11 None
C33D12.2 ENSEMBL cdna:known chromosome:CEL140:X:3041969:3045783:-1 gene:C33D12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3041968-3045783(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33D12.2
Entrez Gene 180591 Entrez gene
SwissProt Q22904 EMBL-EBI
WormBase CE04765 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:20141_AT CBS domain-containing protein at
ATH1-121501:253351_AT CBS domain-containing protein at
Protein Similarities
Method ID Description E-Value
blast AAK39203 Hypothetical protein C33D12.2 [Caenorhabditis elegans] ref|NP_508521.1| C33D12.2 [Caenorhabditis elegans] 0.0
blast T25605 hypothetical protein C33D12.2 - Caenorhabditis elegans 0.0
blast T25605 hypothetical protein C33D12.2 - Caenorhabditis elegans 1.0E-171
blast NP_503052 C52D10.12 [Caenorhabditis elegans] gb|AAK77203.1| Hypothetical protein C52D10.12 [Caenorhabditis elegans] 1.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR002550 EMBL-EBI CBS 9.9E-49
Pfam IPR000644 EMBL-EBI CBS domain 0.0019
Pfam IPR002550 EMBL-EBI CBS 9.9E-49
Pfam IPR000644 EMBL-EBI CBS domain 0.0019
Pfam IPR002550 EMBL-EBI CBS 9.9E-49
Pfam IPR000644 EMBL-EBI CBS domain 0.0019
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508521.1 4 142-164,201-219,223-245,257-279
C33D12.2 4 142-164,201-219,223-245,257-279
GENEFINDER00000019211 5 7-29,39-61,236-258,314-336,348-370
SNAP00000019204 4 4-26,201-223,279-301,313-335
Sequence
Target Sequence 
>C. ELEGANS:184931_AT
ttgggtgcactcgagctttacgacaaaaccgtcgcccacgcgatgacccgttacgaggac
atttttatgttgccccatacgttgacacttggcgctggaatggtgacacagattttagat
atgggttatacgcgtattccgatttacgaaagtaagacatttgggggtgaatcgttgaat
gatgaccgtaagaacattgtcgcacttctgtttgtaaaagatctcgcattgctcgatcct
gacgataatcacaatgtcatgaaaatcgcctcaatttacaaccatgaagttcgtcgtgtg
ttggtagacatgccactccgaaatatgttggaagaatttaaacggggcgaatatcacatg
gcgctggtcgagcgactcgtcgagcaagaagataaagacccgatttacgagctctgtgga
ctgattaccctcgagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGGTGCACTCGAGCTTTACGACA 211 709 979 Antisense
ACGCGATGACCCGTTACGAGGACAT 267 91 1016 Antisense
GAGGACATTTTTATGTTGCCCCATA 334 403 1033 Antisense
TGCCCCATACGTTGACACTTGGCGC 697 583 1049 Antisense
GAACATTGTCGCACTTCTGTTTGTA 169 351 1170 Antisense
TCGCATTGCTCGATCCTGACGATAA 251 601 1202 Antisense
ACAACCATGAAGTTCGTCGTGTGTT 220 113 1256 Antisense
GTGTGTTGGTAGACATGCCACTCCG 157 489 1274 Antisense
GAATATCACATGGCGCTGGTCGAGC 291 323 1327 Antisense
AAGACCCGATTTACGAGCTCTGTGG 652 153 1373 Antisense
CTCTGTGGACTGATTACCCTCGAGG 443 229 1390 Antisense
Sequence Source Affymetrix Proprietary Database