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[184930_at]

Description F11G11.7 /REP_DB=WormBase Gene ID /WP=CE07060 /TR=P91243 /GB=AAB37835.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 46      4grp_high_8_8 > 60      6grp_highest_nonorm > 83      6grp_total > 46      4grp_total > 60      6grp_highest_sub > Cu      6grp_cgc > 36      6grp_high1_sub > Cu      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 306
1 2 3 4 range
A 533.2
(3)
P 		509.6
(2.3)
P 		501.4
(2.1)
P 		315.7
(-3)
M 		218
B 534
(1.7)
P 		550.6
(2.3)
P 		569.6
(3)
P 		410.1
(-3)
P 		160
C 483.7
(-0.1)
P 		582.1
(2.1)
P 		621.2
(3)
P 		357.4
(-3)
P 		264
avr 517
(1.6) 		547.4
(2.5) 		564.1
(3) 		361.1
(-3) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 482.3
(3)
P 		477.5
(2.7)
P 		436.9
(0.6)
P 		413.9
(-0.6)
P 		368.3
(-3)
P 		434.5
(0.5)
P 		114
B 520.9
(2.4)
P 		445.2
(-0.3)
P 		538.7
(3)
P 		440
(-0.4)
P 		366.9
(-3)
P 		464.2
(0.4)
P 		172
C 511.6
(0.1)
P 		464
(-1.1)
P 		442.2
(-1.7)
P 		445.8
(-1.6)
P 		394.2
(-3)
P 		619.9
(3)
P 		226
avr 504.9
(2.9) 		462.2
(1) 		472.6
(1.4) 		433.2
(-0.4) 		376.5
(-3) 		506.2
(3) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 194.1
(3)
P 		110.6
(-0.4)
P 		131.1
(0.4)
P 		46.2
(-3)
M 		148
B 170.3
(3)
P 		136
(0.5)
P 		132
(0.2)
P 		87.4
(-3)
P 		83
C 160.1
(0.8)
P 		167.3
(1.1)
P 		216.5
(3)
P 		60.3
(-3)
P 		156
avr 174.8
(3) 		138
(1) 		159.9
(2.2) 		64.6
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 88.9
(-3)
P 		169.8
(3)
P 		95.1
(-2.5)
P 		105
(-1.8)
P 		111.1
(-1.4)
P 		105.8
(-1.7)
P 		81
B 181.2
(3)
P 		148.2
(-0.1)
P 		130.8
(-1.7)
P 		116.5
(-3)
P 		149.1
(0)
P 		173.1
(2.2)
P 		65
C 189.6
(2.1)
P 		141.6
(-0.4)
P 		112.6
(-1.8)
P 		89.6
(-3)
P 		127.6
(-1.1)
P 		207.5
(3)
P 		118
avr 153.2
(2.1) 		153.2
(2.1) 		112.8
(-2.1) 		103.7
(-3) 		129.3
(-0.4) 		162.1
(3) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184930_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5474
Sequence Type Exemplar sequence
Representative Public ID F11G11.7 NCBI
Target Description F11G11.7 /REP_DB=WormBase Gene ID /WP=CE07060 /TR=P91243 /GB=AAB37835.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062471(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062471 NCBI Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-9) (dnj-9) mRNA, complete cds. 11/11 None
SNAP00000005478 ENSEMBL cdna:SNAP chromosome:CEL140:II:4852044:4854405:1 11/11 None
GENEFINDER00000005503 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4852044:4857513:1 11/11 None
F11G11.7 ENSEMBL cdna:known chromosome:CEL140:II:4852043:4854473:1 gene:F11G11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4852042-4854472(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dnj-9
Ensembl F11G11.7
Entrez Gene 3565947 Entrez gene
SwissProt P91243 EMBL-EBI
WormBase CE07060 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16711_S_AT DNAJ heat shock N-terminal domain-containing protein at
ATH1-121501:265850_AT DNAJ heat shock N-terminal domain-containing protein at
CANINE:1600938_AT similar to DnaJ (Hsp40) homolog, subfamily C, member 11 cfa
CANINE_2:CFA.19160.1.S1_S_AT similar to DnaJ (Hsp40) homolog, subfamily C, member 11 cfa
CANINE_2:CFA.19160.2.S1_AT similar to DnaJ (Hsp40) homolog, subfamily C, member 11 cfa
CANINE_2:CFAAFFX.30016.1.S1_AT similar to DnaJ (Hsp40) homolog, subfamily C, member 11 cfa
CANINE_2:CFAAFFX.30025.1.S1_S_AT similar to DnaJ (Hsp40) homolog, subfamily C, member 11 cfa
CANINE_2:CFAAFFX.30030.1.S1_AT similar to DnaJ (Hsp40) homolog, subfamily C, member 11 cfa
CANINE_2:CFAAFFX.30030.1.S1_S_AT similar to DnaJ (Hsp40) homolog, subfamily C, member 11 cfa
DROSOPHILA_2:1638456_AT dm
DROSGENOME1:154397_AT dm
CHICKEN:GGA.12927.1.S1_AT DnaJ (Hsp40) homolog, subfamily C, member 11 gga
CHICKEN:GGA.15347.1.S1_AT DnaJ (Hsp40) homolog, subfamily C, member 11 gga
HG-U133_PLUS_2:215792_S_AT DnaJ (Hsp40) homolog, subfamily C, member 11 hs
HG-U133A_2:215792_S_AT DnaJ (Hsp40) homolog, subfamily C, member 11 hs
HG-U133A:215792_S_AT DnaJ (Hsp40) homolog, subfamily C, member 11 hs
HU35KSUBA:T79990_AT DnaJ (Hsp40) homolog, subfamily C, member 11 hs
HU35KSUBA:RC_AA069571_AT DnaJ (Hsp40) homolog, subfamily C, member 11 hs
HU35KSUBD:RC_R42317_S_AT DnaJ (Hsp40) homolog, subfamily C, member 11 hs
U133_X3P:HS2.261134.2.S1_3P_S_AT DnaJ (Hsp40) homolog, subfamily C, member 11 hs
U133_X3P:HS.261134.1.S1_3P_A_AT DnaJ (Hsp40) homolog, subfamily C, member 11 hs
HG-U133_PLUS_2:1555360_A_AT DnaJ (Hsp40) homolog, subfamily C, member 11 hs
HG-U95AV2:36840_AT DnaJ (Hsp40) homolog, subfamily C, member 11 hs
HG-U95E:86585_AT DnaJ (Hsp40) homolog, subfamily C, member 11 hs
HG-U133_PLUS_2:241785_AT DnaJ (Hsp40) homolog, subfamily C, member 11 hs
HG-U133B:241785_AT DnaJ (Hsp40) homolog, subfamily C, member 11 hs
HG-U95E:68564_AT DnaJ (Hsp40) homolog, subfamily C, member 11 hs
U133_X3P:HS.192007.0.A1_3P_AT DnaJ (Hsp40) homolog, subfamily C, member 11 hs
MOUSE430_2:1447055_AT DnaJ (Hsp40) homolog, subfamily C, member 11 mm
MOE430B:1447055_AT DnaJ (Hsp40) homolog, subfamily C, member 11 mm
MU11KSUBA:AA500294_AT DnaJ (Hsp40) homolog, subfamily C, member 11 mm
MG-U74AV2:103903_AT DnaJ (Hsp40) homolog, subfamily C, member 11 mm
MOE430A:1433880_AT DnaJ (Hsp40) homolog, subfamily C, member 11 mm
MOUSE430A_2:1433880_AT DnaJ (Hsp40) homolog, subfamily C, member 11 mm
MOUSE430_2:1433880_AT DnaJ (Hsp40) homolog, subfamily C, member 11 mm
MOE430A:1433881_AT DnaJ (Hsp40) homolog, subfamily C, member 11 mm
MOUSE430A_2:1433881_AT DnaJ (Hsp40) homolog, subfamily C, member 11 mm
MOUSE430_2:1433881_AT DnaJ (Hsp40) homolog, subfamily C, member 11 mm
MOE430B:1439763_AT DnaJ (Hsp40) homolog, subfamily C, member 11 mm
MOUSE430_2:1439763_AT DnaJ (Hsp40) homolog, subfamily C, member 11 mm
MG-U74CV2:135916_AT DnaJ (Hsp40) homolog, subfamily C, member 11, mRNA (cDNA clone MGC:103025 IMAGE:5414963) mm
MOUSE430_2:1446686_AT DnaJ (Hsp40) homolog, subfamily C, member 11, mRNA (cDNA clone MGC:103025 IMAGE:5414963) mm
MOE430B:1446686_AT DnaJ (Hsp40) homolog, subfamily C, member 11, mRNA (cDNA clone MGC:103025 IMAGE:5414963) mm
MU19KSUBA:TC25295_AT DnaJ (Hsp40) homolog, subfamily C, member 11, mRNA (cDNA clone MGC:103025 IMAGE:5414963) mm
MU19KSUBB:TC29977_AT DnaJ (Hsp40) homolog, subfamily C, member 11, mRNA (cDNA clone MGC:103025 IMAGE:5414963) mm
MU19KSUBB:TC29977_G_AT DnaJ (Hsp40) homolog, subfamily C, member 11, mRNA (cDNA clone MGC:103025 IMAGE:5414963) mm
MU19KSUBB:TC31627_AT DnaJ (Hsp40) homolog, subfamily C, member 11, mRNA (cDNA clone MGC:103025 IMAGE:5414963) mm
MU19KSUBB:TC32383_AT DnaJ (Hsp40) homolog, subfamily C, member 11, mRNA (cDNA clone MGC:103025 IMAGE:5414963) mm
MU19KSUBB:TC32897_AT DnaJ (Hsp40) homolog, subfamily C, member 11, mRNA (cDNA clone MGC:103025 IMAGE:5414963) mm
RAE230B:1383961_A_AT DnaJ (Hsp40) homolog, subfamily C, member 11 (predicted) rn
RAT230_2:1383961_A_AT DnaJ (Hsp40) homolog, subfamily C, member 11 (predicted) rn
RAE230B:1386711_A_AT DnaJ (Hsp40) homolog, subfamily C, member 11 (predicted) rn
RAT230_2:1386711_A_AT DnaJ (Hsp40) homolog, subfamily C, member 11 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_494872 DNaJ domain (prokaryotic heat shock protein) family member (dnj-9) [Caenorhabditis elegans] gb|AAB37835.1| Dnaj domain (prokaryotic heat shock protein) protein 9 [Caenorhabditis elegans] 0.0
blast CAE56768 Hypothetical protein CBG24572 [Caenorhabditis briggsae] 0.0
blast XP_393479 PREDICTED: similar to ENSANGP00000010200 [Apis mellifera] 6.0E-73
blast XP_393479 PREDICTED: similar to ENSANGP00000010200 [Apis mellifera] 7.0E-73
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 6.99999976701182E-26
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 5.00000009770741E-26
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 3.9E-30
Sequence
Target Sequence 
>C. ELEGANS:184930_AT
catttctcattcccatcatgtttattgtatacgaaattcaaattaaaagctggacaatca
acttttgactggcaaattgtgctctgtgatgacaaagaagctctttcaagaagtgtactg
tatggagtcgcaattccatatttctcattccaacttgctaaagtgatcttccgtccatgg
tgggaaaagtttaaatcaatgtttgaggataattctcgtgaacaagaagttgatgttgct
aaaaaagaagaagccgcgaatattgtgagtttaatgagggcaactgctgaaagaattaaa
cgagatgaagaatcaaaacaaggagttatcattgaaagtgcaaaatatggacaatgtgat
gttagtggaacaagagcttatccattggctggagaacgaacgattgacgtcacagttcca
cttcaagctatggtcaatgacagtcaattgagagtttataccgttaagagtcaactacca
ggattctacgatccatgccccggagagcccaaaatgctcacagtccgctacattttccgt
ggagaagagcattcttgcacggttgccgacgaaatgccgttgatgctcccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTCTCATTCCCATCATGTTTAT 374 215 1168 Antisense
ATATTTCTCATTCCAACTTGCTAAA 392 19 1305 Antisense
TAAAGTGATCTTCCGTCCATGGTGG 537 641 1326 Antisense
GAACAAGAGCTTATCCATTGGCTGG 282 353 1535 Antisense
GTCACAGTTCCACTTCAAGCTATGG 154 465 1576 Antisense
TACCAGGATTCTACGATCCATGCCC 112 651 1643 Antisense
ATGCCCCGGAGAGCCCAAAATGCTC 654 39 1662 Antisense
CAAAATGCTCACAGTCCGCTACATT 164 191 1677 Antisense
AGTCCGCTACATTTTCCGTGGAGAA 584 59 1689 Antisense
CATTCTTGCACGGTTGCCGACGAAA 338 215 1717 Antisense
CGACGAAATGCCGTTGATGCTCCCG 480 251 1734 Antisense
Sequence Source Affymetrix Proprietary Database