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[184929_at]

Description F19G12.3 /REP_DB=WormBase Gene ID /WP=CE07086 /TR=Q19598 /GB=AAG24068.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 03      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 16.6
(-2.8)
A 		24
(-2.4)
A 		12.7
(-3)
A 		135.9
(3)
A 		123
B 47.6
(-1.5)
A 		13.6
(-2.8)
A 		9.2
(-3)
A 		160.7
(3)
A 		152
C 18.5
(-2.8)
A 		18.7
(-2.8)
A 		13.8
(-3)
A 		167.8
(3)
A 		154
avr 27.6
(-2.3) 		18.8
(-2.7) 		11.9
(-3) 		154.8
(3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 12.4
(-3)
A 		15.7
(-2.5)
A 		25.3
(-1)
A 		17.4
(-2.2)
A 		51.1
(3)
A 		47.5
(2.4)
A 		39
B 29.5
(-0.8)
A 		15.9
(-2.2)
A 		20.3
(-1.8)
A 		8.6
(-3)
A 		11
(-2.7)
A 		65.5
(3)
A 		57
C 38.2
(0.6)
A 		41.9
(1)
A 		11.7
(-2.6)
A 		12.8
(-2.5)
A 		8.7
(-3)
A 		57.9
(3)
A 		49
avr 26.7
(-1.1) 		24.5
(-1.4) 		19.1
(-2.2) 		12.9
(-3) 		23.6
(-1.5) 		57
(3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 6.1
(-2)
A 		5.2
(-2.3)
A 		3.3
(-3)
A 		19.9
(3)
A 		17
B 15.2
(-0.6)
A 		3.4
(-2.8)
A 		2.1
(-3)
A 		34.2
(3)
A 		32
C 6.1
(-2.7)
A 		5.4
(-2.8)
A 		4.8
(-3)
A 		28.3
(3)
A 		24
avr 9.1
(-1.6) 		4.7
(-2.7) 		3.4
(-3) 		27.5
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.3
(-3)
A 		5.6
(-1.5)
A 		5.5
(-1.5)
A 		4.4
(-2)
A 		15.4
(3)
A 		11.6
(1.3)
A 		13
B 10.3
(-0.8)
A 		5.3
(-2.2)
A 		4.9
(-2.3)
A 		2.3
(-3)
A 		4.5
(-2.4)
A 		24.4
(3)
A 		22
C 14.2
(1.1)
A 		12.8
(0.6)
A 		3
(-2.9)
A 		2.6
(-3)
A 		2.8
(-2.9)
A 		19.4
(3)
A 		17
avr 8.9
(-0.7) 		7.9
(-1.1) 		4.5
(-2.5) 		3.1
(-3) 		7.6
(-1.2) 		18.5
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184929_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18442
Sequence Type Exemplar sequence
Representative Public ID F19G12.3 NCBI
Target Description F19G12.3 /REP_DB=WormBase Gene ID /WP=CE07086 /TR=Q19598 /GB=AAG24068.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075867(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075867 NCBI Caenorhabditis elegans F19G12.3 (F19G12.3) mRNA, complete cds. 11/11 None
GENEFINDER00000018691 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1422405:1426865:1 10/11 None
SNAP00000018685 ENSEMBL cdna:SNAP chromosome:CEL140:X:1425669:1425988:1 10/11 None
F19G12.3 ENSEMBL cdna:known chromosome:CEL140:X:1425722:1426159:1 gene:F19G12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1425721-1426159(+) 77.59 100.0
Public Domain and Genome References
Gene Title
Ensembl F19G12.3
Entrez Gene 184693 Entrez gene
SwissProt Q19598 EMBL-EBI
WormBase CE07086 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24068 Hypothetical protein F19G12.3 [Caenorhabditis elegans] ref|NP_508268.1| F19G12.3 [Caenorhabditis elegans] 1.0E-64
blast AAG24068 Hypothetical protein F19G12.3 [Caenorhabditis elegans] ref|NP_508268.1| F19G12.3 [Caenorhabditis elegans] 2.0E-37
blast CAC14419 Hypothetical protein Y71A12B.3 [Caenorhabditis elegans] emb|CAB81987.1| Hypothetical protein Y71A12B.2 [Caenorhabditis elegans] ref|NP_493428.1| Y71A12B.3 [Caenorhabditis elegans] ref|NP_493427.1| Y71A12B.2 [Caenorhabditis elegans] 5.0E-10
blast CAB03538 Hypothetical protein T09E11.11 [Caenorhabditis elegans] ref|NP_493123.1| T09E11.11 [Caenorhabditis elegans] 7.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000018691 5 165-187,197-219,226-243,272-294,413-435
Sequence
Target Sequence 
>C. ELEGANS:184929_AT
ggcgatgtgcgggtggagacgcggtacaacaaccgcacaattgaaggggtgctggtcctc
tccaacaacaacgctcaactggtatttgggcccacgcggctccaagtctcggtggagcgg
tacttcttttggaagtaccgcatacgtctcaccagaccaaattggccgctggtgttcctt
cgaggaaactcctccaaccagttcccaatcgaactaatcgagttgatctgtaagagccca
cacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGATGTGCGGGTGGAGACGCGGT 651 541 16 Antisense
CAATTGAAGGGGTGCTGGTCCTCTC 481 175 53 Antisense
CTCTCCAACAACAACGCTCAACTGG 663 229 73 Antisense
ACGCTCAACTGGTATTTGGGCCCAC 276 83 86 Antisense
ACGCGGCTCCAAGTCTCGGTGGAGC 99 91 109 Antisense
TCGGTGGAGCGGTACTTCTTTTGGA 281 605 124 Antisense
TTTGGAAGTACCGCATACGTCTCAC 702 663 143 Antisense
CGTCTCACCAGACCAAATTGGCCGC 531 245 160 Antisense
GTGTTCCTTCGAGGAAACTCCTCCA 156 483 187 Antisense
CTCCAACCAGTTCCCAATCGAACTA 149 235 207 Antisense
GAGTTGATCTGTAAGAGCCCACACC 512 397 235 Antisense
Sequence Source Affymetrix Proprietary Database