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[184927_s_at]

Description Y53C12B.6 /REP_DB=WormBase Gene ID /WP=CE14904 /TR=O18213 /GB=CAB16488.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.1
(1.9)
A 		3.4
(-3)
A 		5.5
(3)
A 		3.6
(-2.4)
A 		2
B 2.7
(-0.6)
A 		3.2
(0.9)
A 		3.9
(3)
A 		1.9
(-3)
A 		2
C 1.9
(-2.8)
A 		12.3
(3)
A 		1.5
(-3)
A 		2.9
(-2.2)
A 		11
avr 3.2
(-2.3) 		6.3
(3) 		3.6
(-1.6) 		2.8
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 4.4
(-2.8)
A 		2.3
(-3)
A 		35.3
(0.3)
A 		12.6
(-2)
A 		15.9
(-1.6)
A 		61.7
(3)
P 		59
B 9.6
(-1.5)
A 		1.8
(-2.9)
A 		15.7
(-0.4)
A 		1.5
(-3)
A 		4.5
(-2.4)
A 		33.7
(3)
P 		32
C 4.6
(-2.6)
A 		4
(-2.7)
A 		3.7
(-2.7)
A 		21.6
(-0.7)
A 		1.2
(-3)
A 		54.9
(3)
P 		54
avr 6.2
(-2.6) 		2.7
(-3) 		18.2
(-1) 		11.9
(-1.8) 		7.2
(-2.4) 		50.1
(3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.9
(3)
A 		0.7
(-2.1)
A 		1.4
(0.9)
A 		0.5
(-3)
A 		1
B 0.8
(1.8)
A 		0.8
(1.8)
A 		0.9
(3)
A 		0.4
(-3)
A 		1
C 0.6
(-2.8)
A 		3.5
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		3
avr 1.1
(0) 		1.7
(3) 		0.9
(-1) 		0.5
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.8
(-3)
A 		0.8
(-3)
A 		7.7
(-0.1)
A 		3.2
(-2)
A 		4.8
(-1.3)
A 		15
(3)
P 		14
B 3.3
(-1.6)
A 		0.6
(-2.9)
A 		3.8
(-1.3)
A 		0.4
(-3)
A 		1.8
(-2.3)
A 		12.6
(3)
P 		12
C 1.7
(-2.6)
A 		1.2
(-2.7)
A 		1
(-2.8)
A 		4.3
(-1.7)
A 		0.4
(-3)
A 		18.4
(3)
P 		18
avr 1.9
(-2.6) 		0.9
(-3) 		4.2
(-1.6) 		2.6
(-2.3) 		2.3
(-2.4) 		15.3
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184927_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3053
Sequence Type Exemplar sequence
Representative Public ID Y53C12B.6 NCBI
Target Description Y53C12B.6 /REP_DB=WormBase Gene ID /WP=CE14904 /TR=O18213 /GB=CAB16488.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063696(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063696 NCBI Caenorhabditis elegans Y53C12B.6 (Y53C12B.6) mRNA, complete cds. 11/11 None
GENEFINDER00000006677 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9721750:9724437:-1 11/11 None
Y53C12B.6 ENSEMBL cdna:known chromosome:CEL140:II:9721739:9724437:-1 gene:Y53C12B.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006650 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9721746-9724434(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53C12B.6
Entrez Gene 174532 Entrez gene
SwissProt O18213 EMBL-EBI
WormBase CE14904 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16488 Hypothetical protein Y53C12B.6 [Caenorhabditis elegans] ref|NP_496097.1| Y53C12B.6 [Caenorhabditis elegans] 0.0
blast CAE57984 Hypothetical protein CBG01047 [Caenorhabditis briggsae] 1.0E-161
blast CAA90355 Hypothetical protein F22B5.3 [Caenorhabditis elegans] ref|NP_495780.1| F22B5.3 [Caenorhabditis elegans] 2.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 1.2E-24
Sequence
Target Sequence 
>C. ELEGANS:184927_S_AT
tggacttgctctggagatgctccaagtgatgtctactgcatccaggtgtacagctgcact
gcagaagatggagggtccgacactgtacaagttgtggatgagaatggatgtacaaccgac
ggtgaactgttgtcaccaataaaatacaaggaagggtctatgagagcagcggcgagctca
cacgcattcaaatttgtggataaccatattgtgtacttcaagtgcaatattcgaattact
gtcaagaatccttcaggagaatgtcccgtcaacaactgttctccaaatggctccactggc
ttaatttcccgtaaagctcgtgacgtttttgagcaccctttcttattgctcaaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGACTTGCTCTGGAGATGCTCCAA 703 547 583 Antisense
GATGCTCCAAGTGATGTCTACTGCA 91 415 598 Antisense
GCATCCAGGTGTACAGCTGCACTGC 178 311 620 Antisense
GAGGGTCCGACACTGTACAAGTTGT 41 401 653 Antisense
GAATGGATGTACAACCGACGGTGAA 419 333 684 Antisense
AGGGTCTATGAGAGCAGCGGCGAGC 321 57 735 Antisense
CGGCGAGCTCACACGCATTCAAATT 39 243 752 Antisense
ACAACTGTTCTCCAAATGGCTCCAC 47 113 854 Antisense
TCCACTGGCTTAATTTCCCGTAAAG 216 587 874 Antisense
GCTCGTGACGTTTTTGAGCACCCTT 131 299 898 Antisense
AGCACCCTTTCTTATTGCTCAAACA 563 77 914 Antisense
Sequence Source Affymetrix Proprietary Database