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[184926_at] 7TM chemoreceptor, srg family

Description C24B9.11 /REP_DB=WormBase Gene ID /WP=CE17453 /TR=O76440 /GB=AAC19258.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 02      6grp_cgc > 23      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 31.3
(-2.4)
A 		21.9
(-2.8)
A 		17.6
(-3)
A 		152
(3)
M 		134
B 31
(-3)
A 		33.6
(-2.3)
A 		45.1
(0.6)
A 		54.7
(3)
A 		24
C 22
(-2)
A 		5.6
(-3)
A 		21.5
(-2.1)
A 		106.8
(3)
P 		101
avr 28.1
(-2.5) 		20.4
(-3) 		28.1
(-2.5) 		104.5
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 47.3
(3)
A 		38.8
(1.9)
A 		2.3
(-3)
A 		6.3
(-2.5)
A 		7.9
(-2.3)
A 		3.4
(-2.9)
A 		45
B 25.8
(1.9)
A 		30.6
(3)
A 		26.3
(2)
A 		3.6
(-3)
A 		11.6
(-1.2)
A 		28.8
(2.6)
A 		27
C 40
(2.6)
A 		35.8
(2)
A 		16.3
(-0.9)
A 		42.4
(3)
A 		5.5
(-2.5)
A 		1.9
(-3)
A 		41
avr 37.7
(3) 		35.1
(2.5) 		15
(-1.6) 		17.4
(-1.1) 		8.3
(-3) 		11.4
(-2.4) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 11.4
(-0.7)
A 		4.7
(-3)
A 		4.6
(-3)
A 		22.2
(3)
M 		18
B 9.9
(-0.2)
A 		8.3
(-3)
A 		10.5
(0.9)
A 		11.7
(3)
A 		3
C 7.3
(-0.9)
A 		1.6
(-3)
A 		7.5
(-0.8)
A 		18
(3)
P 		16
avr 9.5
(-0.8) 		4.9
(-3) 		7.5
(-1.7) 		17.3
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 8.7
(0.7)
A 		13.8
(3)
A 		0.5
(-3)
A 		1.6
(-2.5)
A 		2.4
(-2.1)
A 		0.8
(-2.9)
A 		13
B 9
(2)
A 		10.2
(2.7)
A 		6.4
(0.4)
A 		0.9
(-3)
A 		4.7
(-0.7)
A 		10.7
(3)
A 		10
C 14.8
(3)
A 		10.9
(1.4)
A 		4.2
(-1.5)
A 		8.5
(0.3)
A 		1.8
(-2.5)
A 		0.6
(-3)
A 		14
avr 10.8
(2.4) 		11.6
(3) 		3.7
(-2.5) 		3.7
(-2.5) 		3
(-3) 		4
(-2.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184926_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15584
Sequence Type Exemplar sequence
Representative Public ID C24B9.11 NCBI
Target Description C24B9.11 /REP_DB=WormBase Gene ID /WP=CE17453 /TR=O76440 /GB=AAC19258.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071343(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071343 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-61) (srg-61) mRNA, complete cds. 11/11 None
C24B9.11 ENSEMBL cdna:known chromosome:CEL140:V:2738585:2740107:-1 gene:C24B9.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2738584-2740107(-) 88.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-61
Ensembl C24B9.11
Entrez Gene 182843 Entrez gene
SwissProt O76440 EMBL-EBI
WormBase CE33272 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19258 Serpentine receptor, class g (gamma) protein 61 [Caenorhabditis elegans] ref|NP_503744.2| Serpentine Receptor, class G (gamma) family member (srg-61) [Caenorhabditis elegans] 1.0E-162
blast NP_504449 Serpentine Receptor, class G (gamma) family member (srg-66) [Caenorhabditis elegans] gb|AAO26001.1| Serpentine receptor, class g (gamma) protein 66 [Caenorhabditis elegans] 6.0E-87
blast AAB04962 Serpentine receptor, class g (gamma) protein 68 [Caenorhabditis elegans] ref|NP_504444.1| Serpentine Receptor, class G (gamma) family member (srg-68) [Caenorhabditis elegans] 9.0E-85
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503744.2 7 20-42,62-84,104-121,141-163,185-207,228-247,262-284
C24B9.11 7 20-42,62-84,104-121,141-163,185-207,228-247,262-284
Sequence
Target Sequence 
>C. ELEGANS:184926_AT
ttcacctggtggtttatgcacattcaatttctaactgcatcagttctgagtgtgcataga
attactgcaattttatctgccgctcgctatgagaagtcctgggcgcgatactattttgtg
tgtggtattttatttgcattatacagttttctgccaagtctgctgtggtttgggtttacc
aatgaagttgttatattaaatggaacactttctattataaaacattccgggacaattgtc
aaagcaacgaatgttaccgcaatattctccgtaatttattttattgtaattttctcactg
ggagtagtaacttcctgcatgttcaccaaattctcgtcaacctacgaaaaaattaccaaa
aaattgacaaaaattgcactgacctattgctttttgtacgctggaattttatgttggacg
gttattactgcactccataatcaatataattttcttcccagttttgttatcaagattaat
caaacttttttagtcttctcatccgatttgatgaccttatcattaccatatattttgctt
atttatgatacaaatgtcaggaagcaggtgttccccaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACCTGGTGGTTTATGCACATTC 560 687 466 Antisense
TTTTATCTGCCGCTCGCTATGAGAA 455 675 536 Antisense
AGAAGTCCTGGGCGCGATACTATTT 123 73 557 Antisense
AGTTTTCTGCCAAGTCTGCTGTGGT 310 63 610 Antisense
GAATGTTACCGCAATATTCTCCGTA 519 331 714 Antisense
GTAGTAACTTCCTGCATGTTCACCA 209 457 769 Antisense
TGTTCACCAAATTCTCGTCAACCTA 141 561 785 Antisense
GACCTATTGCTTTTTGTACGCTGGA 490 383 846 Antisense
GTTGGACGGTTATTACTGCACTCCA 548 435 878 Antisense
TTTTTTAGTCTTCTCATCCGATTTG 93 675 951 Antisense
GTCAGGAAGCAGGTGTTCCCCAAGA 244 467 1021 Antisense
Sequence Source Affymetrix Proprietary Database