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[184925_at]

Description E03H12.3 /REP_DB=WormBase Gene ID /WP=CE09142 /TR=O02127 /GB=AAC47977.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 7.8
(-2.6)
A 		3.5
(-3)
A 		33
(-0.4)
A 		72.7
(3)
A 		69
B 38.4
(0.3)
A 		64.5
(3)
A 		5.9
(-3)
A 		10.1
(-2.6)
A 		59
C 4.8
(-3)
A 		31.9
(-2.1)
A 		25.2
(-2.4)
A 		193.5
(3)
P 		189
avr 17
(-3) 		33.3
(-1.7) 		21.4
(-2.6) 		92.1
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 58.8
(3)
A 		23.6
(-1)
A 		35.7
(0.3)
A 		6.6
(-3)
A 		38.1
(0.6)
A 		27.9
(-0.6)
A 		52
B 33.9
(2)
A 		15.6
(-1.1)
A 		39.6
(3)
A 		22.3
(0)
A 		35.6
(2.3)
A 		4.7
(-3)
A 		35
C 5
(-2.9)
A 		46.5
(3)
A 		44.3
(2.7)
A 		8.4
(-2.4)
A 		4.5
(-3)
A 		4.9
(-2.9)
A 		42
avr 32.6
(1.4) 		28.6
(0.5) 		39.9
(3) 		12.4
(-3) 		26.1
(-0) 		12.5
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 2.8
(-1.8)
A 		0.8
(-3)
A 		8.6
(1.8)
A 		10.6
(3)
A 		10
B 12.2
(1.5)
A 		15.9
(3)
A 		1.4
(-3)
A 		2.2
(-2.7)
A 		15
C 1.6
(-3)
A 		9.2
(-1.5)
A 		8.8
(-1.6)
A 		32.6
(3)
P 		31
avr 5.5
(-3) 		8.6
(-1.1) 		6.3
(-2.5) 		15.1
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 10.8
(2.6)
A 		8.4
(1.1)
A 		7.8
(0.7)
A 		1.7
(-3)
A 		11.5
(3)
A 		6.8
(0.1)
A 		10
B 11.8
(1.7)
A 		5.2
(-1.4)
A 		9.6
(0.7)
A 		5.9
(-1)
A 		14.5
(3)
A 		1.7
(-3)
A 		13
C 1.9
(-2.8)
A 		14.2
(3)
A 		11.3
(1.6)
A 		1.7
(-2.9)
A 		1.4
(-3)
A 		1.6
(-2.9)
A 		13
avr 8.2
(1.7) 		9.3
(2.7) 		9.6
(3) 		3.1
(-3) 		9.1
(2.5) 		3.4
(-2.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184925_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10723
Sequence Type Exemplar sequence
Representative Public ID E03H12.3 NCBI
Target Description E03H12.3 /REP_DB=WormBase Gene ID /WP=CE09142 /TR=O02127 /GB=AAC47977.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068291(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068291 NCBI Caenorhabditis elegans E03H12.3 (E03H12.3) mRNA, complete cds. 11/11 None
GENEFINDER00000020616 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4982586:4985365:1 11/11 None
E03H12.3 ENSEMBL cdna:known chromosome:CEL140:IV:4984036:4985365:1 gene:E03H12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020610 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4984041-4985371(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E03H12.3
Entrez Gene 184028 Entrez gene
SwissProt O02127 EMBL-EBI
WormBase CE09142 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500692 E03H12.3 [Caenorhabditis elegans] gb|AAC47977.1| Hypothetical protein E03H12.3 [Caenorhabditis elegans] 0.0
blast NP_500693 E03H12.2 [Caenorhabditis elegans] gb|AAC47978.1| Hypothetical protein E03H12.2 [Caenorhabditis elegans] 1.0E-117
blast NP_500691 E03H12.4 [Caenorhabditis elegans] gb|AAC47979.1| Hypothetical protein E03H12.4 [Caenorhabditis elegans] 3.0E-99
blast NP_500691 E03H12.4 [Caenorhabditis elegans] gb|AAC47979.1| Hypothetical protein E03H12.4 [Caenorhabditis elegans] 6.0E-65
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500692.1 1 26-48
E03H12.3 1 26-48
Sequence
Target Sequence 
>C. ELEGANS:184925_AT
aatattcagcacctacttggacaatatcttacgacaaaaattgcttaaataccgatttta
gaatgtttccaagaccagttggtgcattttatttagctgtgctaccgtcagttggaaata
aaataaaatctacatcgttctgtaaaaatttaagttccagtttggatatagctggaatgc
aatctaagaaagaatttgattatgttctaaaaaccgctaaatttataaccggctacacac
cagactatcaatatactactgtatggctcagtggaacaatgagatcggcatgccaaacaa
gtccaataccttctggatgtgatggtttgaatgcattttctggatttccttatcaggata
actttgacgtttaccagtttgctcctggttacccatacattgcaaaaacatcagcaccca
gaagtttgcaattattgtatgcacaaacggaaagtgaactcgagggaaaagttagtgacg
catacagtgaatatgtttgtgatggtcaaaaccccgcagtcatctgtgtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATATTCAGCACCTACTTGGACAAT 597 173 458 Antisense
AGACCAGTTGGTGCATTTTATTTAG 378 69 529 Antisense
TTAGCTGTGCTACCGTCAGTTGGAA 306 681 550 Antisense
TTATAACCGGCTACACACCAGACTA 47 679 680 Antisense
GGAACAATGAGATCGGCATGCCAAA 522 527 730 Antisense
GGCATGCCAAACAAGTCCAATACCT 166 537 744 Antisense
GAATGCATTTTCTGGATTTCCTTAT 616 327 786 Antisense
TTTGACGTTTACCAGTTTGCTCCTG 369 657 820 Antisense
TGCTCCTGGTTACCCATACATTGCA 387 577 837 Antisense
TTGTGATGGTCAAAACCCCGCAGTC 198 703 954 Antisense
AAAACCCCGCAGTCATCTGTGTTTT 138 131 965 Antisense
Sequence Source Affymetrix Proprietary Database