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[184924_at]

Description Y52B11A.4 /REP_DB=WormBase Gene ID /WP=CE24415 /TR=Q9U254 /GB=CAB54465.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 0      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.1
(-3)
A 		5.3
(-2.1)
A 		5.8
(-1.7)
A 		11.8
(3)
A 		8
B 2
(-3)
A 		3
(-2.3)
A 		10.7
(3)
A 		8.7
(1.6)
A 		9
C 12.7
(3)
A 		4
(-2.9)
A 		3.9
(-3)
A 		5.6
(-1.8)
A 		9
avr 6.3
(-0.1) 		4.1
(-3) 		6.8
(0.5) 		8.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 3.6
(1.3)
A 		4.4
(3)
A 		3.7
(1.6)
A 		3.9
(2)
A 		1.5
(-3)
A 		3.4
(0.9)
A 		3
B 3.6
(1.3)
A 		4.3
(3)
A 		2.6
(-1.3)
A 		2
(-2.8)
A 		3.7
(1.5)
A 		1.9
(-3)
A 		2
C 4.8
(1.3)
A 		6.1
(3)
A 		3.7
(-0.1)
A 		2.6
(-1.6)
A 		3.4
(-0.5)
A 		1.5
(-3)
A 		5
avr 4
(0.9) 		4.9
(3) 		3.3
(-0.7) 		2.8
(-1.8) 		2.9
(-1.6) 		2.3
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.5
(1)
A 		1.1
(-3)
A 		1.5
(1)
A 		1.7
(3)
A 		1
B 0.7
(-3)
A 		0.8
(-2.7)
A 		2.5
(3)
A 		1.9
(1)
A 		2
C 4.2
(3)
A 		1.2
(-2.5)
A 		1.4
(-2.1)
A 		0.9
(-3)
A 		3
avr 2.1
(3) 		1
(-3) 		1.8
(1.4) 		1.5
(-0.3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.7
(-1.9)
A 		1.6
(3)
A 		0.8
(-1.4)
A 		1
(-0.3)
A 		0.5
(-3)
A 		0.8
(-1.4)
A 		1
B 1.2
(1.2)
A 		1.4
(2.4)
A 		0.6
(-2.4)
A 		0.5
(-3)
A 		1.5
(3)
A 		0.7
(-1.8)
A 		1
C 1.8
(2.6)
A 		1.9
(3)
A 		0.9
(-1.3)
A 		0.5
(-3)
A 		1.1
(-0.4)
A 		0.5
(-3)
A 		1
avr 1.2
(0.3) 		1.6
(3) 		0.8
(-2.3) 		0.7
(-3) 		1
(-1) 		0.7
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184924_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1156
Sequence Type Exemplar sequence
Representative Public ID Y52B11A.4 NCBI
Target Description Y52B11A.4 /REP_DB=WormBase Gene ID /WP=CE24415 /TR=Q9U254 /GB=CAB54465.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060455(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060455 NCBI Caenorhabditis elegans Y52B11A.4 (Y52B11A.4) mRNA, complete cds. 11/11 None
GENEFINDER00000015608 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10988133:10993625:-1 11/11 None
Y52B11A.4 ENSEMBL cdna:known chromosome:CEL140:I:10987732:11012408:-1 gene:Y52B11A.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10988063-11012339(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y52B11A.4
Entrez Gene 173003 Entrez gene
SwissProt Q9U254 EMBL-EBI
WormBase CE24415 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
160 two-component signal transduction system (phosphorelay) inferred from electronic annotation QuickGO AmiGO
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54465 Hypothetical protein Y52B11A.4 [Caenorhabditis elegans] ref|NP_492856.1| Y52B11A.4 [Caenorhabditis elegans] 0.0
blast CAE63527 Hypothetical protein CBG08006 [Caenorhabditis briggsae] 0.0
blast CAE63527 Hypothetical protein CBG08006 [Caenorhabditis briggsae] 1.0E-170
blast AAQ23560 RE48016p [Drosophila melanogaster] 4.0E-20
blast AAQ23560 RE48016p [Drosophila melanogaster] 5.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 1.2E-6
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 1.2E-6
Sequence
Target Sequence 
>C. ELEGANS:184924_AT
aacgcgtttgccgacgagattcaggactacgaaaatacagtatccatttgtattggtggt
gttgagtgtgatttggtgttctttgaatcggatatgtctgacccgtgctggcttacaaat
gagattcacgcatttttggttgtctatagtattgattcgaaatccagttggaagcaggca
atggttgcgttggagatgattcgcgatcgtccgggcacgagaaatttgccaacgctggtg
gcaggcaacaaaatcgatttggagaggaaaaggacagtcacgaagcaagaagtgcgcgcg
gcgaaagccgccatgggcttcgagcatttcgagatttctgtcgcgttggaccatgacgtc
gacgatcttctggtgggattagttgctgaaattcaagaagcttttgctccggaatctgtg
ctccaaaaaccatcgccacgtcatcatccgatcgacgattttcacagtgctattcggaga
tattcgcagaggaagaagaaggctccgttgaatgatttggaaggaggaaagtgcacaatg
ctctccccgaccggattattcgcaaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGCGTTTGCCGACGAGATTCAGG 490 145 802 Antisense
GAATCGGATATGTCTGACCCGTGCT 583 329 886 Antisense
CTGACCCGTGCTGGCTTACAAATGA 268 239 899 Antisense
TGGAGATGATTCGCGATCGTCCGGG 494 549 992 Antisense
CAAGAAGTGCGCGCGGCGAAAGCCG 24 185 1087 Antisense
CGCCATGGGCTTCGAGCATTTCGAG 209 257 1110 Antisense
GATTTCTGTCGCGTTGGACCATGAC 493 427 1134 Antisense
GACCATGACGTCGACGATCTTCTGG 465 383 1150 Antisense
CCACGTCATCATCCGATCGACGATT 106 275 1237 Antisense
GATCGACGATTTTCACAGTGCTATT 639 417 1251 Antisense
TCCCCGACCGGATTATTCGCAAAAT 277 595 1345 Antisense
Sequence Source Affymetrix Proprietary Database