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[184923_at]

Description W06E11.2 /REP_DB=WormBase Gene ID /WP=CE01427 /TR=Q23205 /GB=AAK29862.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 85      4grp_highest_8_8 > 05      4grp_high_8_8 > 29      6grp_highest_nonorm > 82      6grp_total > 75      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 485.7
(-1.6)
P 		559.5
(2)
P 		456.6
(-3)
P 		579.4
(3)
P 		123
B 445.3
(-3)
P 		513.5
(3)
P 		471.2
(-0.7)
P 		512.7
(2.9)
P 		68
C 502.4
(-3)
P 		613.5
(3)
P 		536.9
(-1.1)
P 		599.8
(2.3)
P 		111
avr 477.8
(-3) 		562.2
(2.9) 		488.2
(-2.3) 		564
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 274.6
(-3)
P 		323
(-0.5)
P 		389.2
(3)
P 		372.2
(2.1)
P 		306.6
(-1.3)
P 		345.3
(0.7)
P 		115
B 300.6
(-3)
P 		349
(0.1)
P 		380.2
(2)
P 		310.9
(-2.4)
P 		395.7
(3)
P 		388.3
(2.5)
P 		95
C 343.4
(0.1)
P 		349.1
(0.3)
P 		260.1
(-3)
P 		400.3
(2.2)
P 		307.8
(-1.2)
P 		421.6
(3)
P 		162
avr 306.2
(-3) 		340.4
(-0.4) 		343.2
(-0.2) 		361.1
(1.2) 		336.7
(-0.7) 		385.1
(3) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 176.8
(3)
P 		121.4
(-0.6)
P 		119.4
(-0.7)
P 		84.8
(-3)
P 		92
B 142
(3)
P 		126.8
(0.2)
P 		109.2
(-3)
P 		109.3
(-3)
P 		33
C 166.3
(1.5)
P 		176.4
(2.3)
P 		187.1
(3)
P 		101.1
(-3)
P 		86
avr 161.7
(3) 		141.5
(1.1) 		138.6
(0.8) 		98.4
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 50.6
(-3)
P 		114.9
(3)
P 		84.8
(0.2)
P 		94.4
(1.1)
P 		92.5
(0.9)
P 		84.1
(0.1)
P 		64
B 104.6
(-1.3)
P 		116.2
(-0.4)
P 		92.3
(-2.2)
P 		82.3
(-3)
P 		160.8
(3)
P 		144.8
(1.8)
P 		79
C 127.3
(1.9)
P 		106.5
(0.2)
P 		66.2
(-3)
P 		80.5
(-1.9)
P 		99.6
(-0.3)
P 		141.2
(3)
P 		75
avr 94.2
(-1.1) 		112.5
(1.5) 		81.1
(-3) 		85.7
(-2.3) 		117.6
(2.2) 		123.4
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184923_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8201
Sequence Type Exemplar sequence
Representative Public ID W06E11.2 NCBI
Target Description W06E11.2 /REP_DB=WormBase Gene ID /WP=CE01427 /TR=Q23205 /GB=AAK29862.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064827(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064827 NCBI Caenorhabditis elegans W06E11.2 (W06E11.2) mRNA, complete cds. 11/11 None
SNAP00000038891 ENSEMBL cdna:SNAP chromosome:CEL140:III:639787:641537:1 10/11 None
GENEFINDER00000038900 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:640791:641537:1 11/11 None
W06E11.2 ENSEMBL cdna:known chromosome:CEL140:III:640791:641537:1 gene:W06E11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:640790-641537(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06E11.2
Entrez Gene 175220 Entrez gene
SwissProt Q23205 EMBL-EBI
WormBase CE01427 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29862 Hypothetical protein W06E11.2 [Caenorhabditis elegans] ref|NP_497228.1| W06E11.2 [Caenorhabditis elegans] 9.0E-95
blast AAK29862 Hypothetical protein W06E11.2 [Caenorhabditis elegans] ref|NP_497228.1| W06E11.2 [Caenorhabditis elegans] 6.0E-82
blast CAE69212 Hypothetical protein CBG15252 [Caenorhabditis briggsae] 7.0E-66
blast CAE69212 Hypothetical protein CBG15252 [Caenorhabditis briggsae] 3.0E-58
Sequence
Target Sequence 
>C. ELEGANS:184923_AT
cgaaagcaccaggactcggactcagagcaatctggaaaacgggtaaaaaaagtggaagaa
gccagaaatggtgtggctgacatgacgatcgatgagagctcggattttcaagttttcctc
atcaaaaaaccgattggtgttagtttagaagatttggaggcgctaaaatggtcaaacgac
gaggaagtgttgacgaaaaccaaattgaagacagaatccggagttttccgagctattgtt
gcgccaaagtcgaaaaaggagcggatggtgcatattccggcgttcagggagcgggaagaa
gctgactcgaagaatattaaagctcagagtttcgtcactggcgccatcacaattctcccg
caagaggtgaagcccaaggtactaggaggatttatttatgaagaaggcgaagaacccgtt
gaaggctcttcagaagtccatccaggcctgaaaaagatcaaaaagaccgcaattttggac
ctggaaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAAAGCACCAGGACTCGGACTCAG 19 253 25 Antisense
GGTGTGGCTGACATGACGATCGATG 436 499 94 Antisense
GGATTTTCAAGTTTTCCTCATCAAA 617 509 126 Antisense
TCCGAGCTATTGTTGCGCCAAAGTC 685 595 251 Antisense
GAGCGGATGGTGCATATTCCGGCGT 145 385 283 Antisense
ATATTCCGGCGTTCAGGGAGCGGGA 121 13 296 Antisense
AAAGCTCAGAGTTTCGTCACTGGCG 310 123 343 Antisense
ATTCTCCCGCAAGAGGTGAAGCCCA 565 7 376 Antisense
AGGCGAAGAACCCGTTGAAGGCTCT 338 15 429 Antisense
GAAGGCTCTTCAGAAGTCCATCCAG 488 333 445 Antisense
GACCGCAATTTTGGACCTGGAAAGC 305 381 489 Antisense
Sequence Source Affymetrix Proprietary Database