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[184922_at]

Description E03H12.4 /REP_DB=WormBase Gene ID /WP=CE09143 /TR=O02126 /GB=AAC47979.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 23.6
(3)
A 		7
(-3)
A 		17.9
(0.9)
A 		14.2
(-0.4)
A 		17
B 3.2
(-3)
A 		7
(-1.6)
A 		9.1
(-0.8)
A 		19.4
(3)
A 		16
C 23.7
(-2)
A 		3.7
(-3)
A 		2.7
(-3)
A 		131.9
(3)
M 		129
avr 16.8
(-1.7) 		5.9
(-3) 		9.9
(-2.5) 		55.2
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 3.3
(-2.9)
A 		2.6
(-3)
A 		52.6
(3)
A 		4.5
(-2.8)
A 		30.5
(0.3)
A 		11.1
(-2)
A 		50
B 20.2
(0.4)
A 		28
(2.1)
A 		18.4
(0)
A 		4.5
(-3)
A 		9.9
(-1.8)
A 		32.2
(3)
A 		28
C 3.4
(-3)
A 		55.3
(3)
A 		12.3
(-2)
A 		3.2
(-3)
A 		5
(-2.8)
A 		24
(-0.6)
A 		52
avr 9
(-1.8) 		28.6
(3) 		27.8
(2.8) 		4.1
(-3) 		15.1
(-0.3) 		22.4
(1.5) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 8.6
(3)
A 		1.5
(-3)
A 		4.7
(-0.3)
A 		2.1
(-2.5)
A 		7
B 1
(-3)
A 		1.7
(-1.6)
A 		2.1
(-0.9)
A 		4.1
(3)
A 		3
C 7.8
(-1.1)
A 		1.1
(-2.9)
A 		0.9
(-3)
A 		22.2
(3)
M 		21
avr 5.8
(0.3) 		1.4
(-3) 		2.6
(-2.1) 		9.5
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.9
(-2.8)
A 		11.5
(3)
A 		1.1
(-2.7)
A 		9.2
(1.7)
A 		2.7
(-1.8)
A 		11
B 7
(0.2)
A 		9.3
(1.5)
A 		4.5
(-1.2)
A 		1.2
(-3)
A 		4
(-1.4)
A 		12
(3)
A 		11
C 1.3
(-2.7)
A 		16.9
(3)
A 		3.1
(-2.1)
A 		0.6
(-3)
A 		1.6
(-2.6)
A 		8
(-0.3)
A 		16
avr 3
(-1.5) 		9
(3) 		6.4
(1.1) 		1
(-3) 		4.9
(-0.1) 		7.6
(2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184922_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10555
Sequence Type Exemplar sequence
Representative Public ID E03H12.4 NCBI
Target Description E03H12.4 /REP_DB=WormBase Gene ID /WP=CE09143 /TR=O02126 /GB=AAC47979.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068290(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068290 NCBI Caenorhabditis elegans E03H12.4 (E03H12.4) mRNA, complete cds. 11/11 None
GENEFINDER00000020616 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4982586:4985365:1 11/11 None
E03H12.4 ENSEMBL cdna:known chromosome:CEL140:IV:4982473:4983432:1 gene:E03H12.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020610 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4982478-4983438(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E03H12.4
Entrez Gene 184029 Entrez gene
SwissProt O02126 EMBL-EBI
WormBase CE09143 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500692 E03H12.3 [Caenorhabditis elegans] gb|AAC47977.1| Hypothetical protein E03H12.3 [Caenorhabditis elegans] 0.0
blast NP_500693 E03H12.2 [Caenorhabditis elegans] gb|AAC47978.1| Hypothetical protein E03H12.2 [Caenorhabditis elegans] 1.0E-117
blast NP_500691 E03H12.4 [Caenorhabditis elegans] gb|AAC47979.1| Hypothetical protein E03H12.4 [Caenorhabditis elegans] 1.0E-112
blast NP_500691 E03H12.4 [Caenorhabditis elegans] gb|AAC47979.1| Hypothetical protein E03H12.4 [Caenorhabditis elegans] 3.0E-99
blast NP_500692 E03H12.3 [Caenorhabditis elegans] gb|AAC47977.1| Hypothetical protein E03H12.3 [Caenorhabditis elegans] 2.0E-65
blast NP_500693 E03H12.2 [Caenorhabditis elegans] gb|AAC47978.1| Hypothetical protein E03H12.2 [Caenorhabditis elegans] 1.0E-63
Sequence
Target Sequence 
>C. ELEGANS:184922_AT
agctcttgtactctatgcgatatctactttgcttccaaaatcacacagtcaaactctaca
tcaaatgttcaaactgcaataaaagttgactcacaactccaatgtcccaaaaatataact
acaaatcaatattcttacacgaatggctacaacaactacaaagttatatactcggaacct
atctggacaatatcttatgacaaaaattgcatagatgaaactttccgaatgtttccgaga
ccagctggggcattttgtttaactgtgccaccgccaacaggcatcaattacatcaattct
agtgcttcatgtaaagcttccggttcgggaatggaaatagccggaatgcagtcggagaaa
gaatttaattatgttctaaaaactgcaaaagtaaacgttggattcgacccatcgttgaag
tacaaatcagtttggttaacaggaaaaatgagatcggcgtgtcaaaccaggcctatccca
gatggttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTCTTGTACTCTATGCGATATCT 661 79 82 Antisense
TTGACTCACAACTCCAATGTCCCAA 244 703 167 Antisense
ATATACTCGGAACCTATCTGGACAA 108 13 247 Antisense
CTTTCCGAATGTTTCCGAGACCAGC 508 223 302 Antisense
GAGACCAGCTGGGGCATTTTGTTTA 149 395 318 Antisense
GCATTTTGTTTAACTGTGCCACCGC 312 307 331 Antisense
CCGCCAACAGGCATCAATTACATCA 453 261 352 Antisense
TTCATGTAAAGCTTCCGGTTCGGGA 323 687 387 Antisense
AACGTTGGATTCGACCCATCGTTGA 174 139 475 Antisense
GAGATCGGCGTGTCAAACCAGGCCT 61 393 531 Antisense
AACCAGGCCTATCCCAGATGGTTGC 520 145 546 Antisense
Sequence Source Affymetrix Proprietary Database