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[184921_at]

Description Y39A1A.10 /REP_DB=WormBase Gene ID /WP=CE19129 /TR=Q9XX23 /GB=CAA21017.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 20.6
(-1.5)
A 		2.4
(-3)
A 		75.8
(3)
A 		60.7
(1.8)
A 		73
B 4.9
(-2.8)
A 		3.8
(-3)
A 		7.9
(-2.3)
A 		40.7
(3)
A 		37
C 2.3
(-3)
A 		49
(3)
A 		13.1
(-1.6)
A 		24
(-0.2)
A 		47
avr 9.3
(-3) 		18.4
(-1.3) 		32.3
(1.2) 		41.8
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 28
(3)
A 		3.1
(-2.8)
A 		13.9
(-0.3)
A 		22
(1.6)
A 		4.2
(-2.5)
A 		2.2
(-3)
A 		26
B 16
(-0.2)
A 		5.5
(-2.4)
A 		2.4
(-3)
A 		9.3
(-1.6)
A 		31.7
(3)
A 		7.6
(-1.9)
A 		29
C 33.1
(2.3)
A 		36.9
(3)
A 		18.2
(-0.7)
A 		6.4
(-3)
A 		29.3
(1.5)
A 		8.2
(-2.6)
A 		31
avr 25.7
(3) 		15.2
(-0.2) 		11.5
(-1.3) 		12.6
(-1) 		21.7
(1.8) 		6
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 7.5
(-0.8)
A 		0.5
(-3)
A 		19.8
(3)
A 		8.9
(-0.4)
A 		19
B 1.5
(-2.5)
A 		0.9
(-3)
A 		1.8
(-2.3)
A 		8.7
(3)
A 		8
C 0.7
(-3)
A 		14.1
(3)
A 		4.6
(-1.3)
A 		4
(-1.5)
A 		13
avr 3.2
(-3) 		5.2
(-0.8) 		8.7
(3) 		7.2
(1.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5.2
(2.5)
A 		1.1
(-2.3)
A 		3
(-0.1)
A 		5.6
(3)
A 		1.3
(-2.1)
A 		0.5
(-3)
A 		5
B 5.6
(-0.6)
A 		1.8
(-2.4)
A 		0.6
(-3)
A 		2.5
(-2.1)
A 		12.9
(3)
A 		2.8
(-1.9)
A 		12
C 12.3
(3)
A 		11.3
(2.5)
A 		4.6
(-1.2)
A 		1.3
(-3)
A 		9.5
(1.5)
A 		2.7
(-2.2)
A 		11
avr 7.7
(2.8) 		4.7
(-0.3) 		2.7
(-2.3) 		3.1
(-1.9) 		7.9
(3) 		2
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184921_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7542
Sequence Type Exemplar sequence
Representative Public ID Y39A1A.10 NCBI
Target Description Y39A1A.10 /REP_DB=WormBase Gene ID /WP=CE19129 /TR=Q9XX23 /GB=CAA21017.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066944(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066944 NCBI Caenorhabditis elegans Y39A1A.10 (Y39A1A.10) mRNA, complete cds. 11/11 None
Y39A1A.10 ENSEMBL cdna:known chromosome:CEL140:III:10632605:10632961:1 gene:Y39A1A.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10632600-10632957(+) 84.03 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A1A.10
Entrez Gene 189709 Entrez gene
SwissProt Q9XX23 EMBL-EBI
WormBase CE19129 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21017 Hypothetical protein Y39A1A.10 [Caenorhabditis elegans] ref|NP_499345.1| Y39A1A.10 [Caenorhabditis elegans] 1.0E-48
Sequence
Target Sequence 
>C. ELEGANS:184921_AT
tgttctctgctcctctggagaacaccatgctttgcaacatgggaggttcacacgagaaag
cgagagcacgagagaatgagagaatgagagagagagagcgtggaaaagagcaaagaactt
attttgccactggctctttggcgcggtgccaagctgggagcgtgcgccgcgcaccgggaa
cgaggcgacacccagggtcatcaaccgttcaaggtttcggtactgttgtgtctctcgagg
cgaacaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCTCTGCTCCTCTGGAGAACAC 219 563 14 Antisense
TGGAGAACACCATGCTTTGCAACAT 322 549 29 Antisense
GCAACATGGGAGGTTCACACGAGAA 482 319 47 Antisense
GGTTCACACGAGAAAGCGAGAGCAC 3 507 58 Antisense
AAAGAACTTATTTTGCCACTGGCTC 465 121 125 Antisense
TTATTTTGCCACTGGCTCTTTGGCG 386 679 132 Antisense
TCTTTGGCGCGGTGCCAAGCTGGGA 663 613 148 Antisense
CCCAGGGTCATCAACCGTTCAAGGT 41 259 204 Antisense
GGTCATCAACCGTTCAAGGTTTCGG 471 503 209 Antisense
AAGGTTTCGGTACTGTTGTGTCTCT 154 161 224 Antisense
GTTGTGTCTCTCGAGGCGAACAAGG 7 437 238 Antisense
Sequence Source Affymetrix Proprietary Database