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[184920_s_at]

Description F48A11.5 /REP_DB=WormBase Gene ID /WP=CE10730 /TR=O17370 /GB=AAB71287.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 127.1
(-3)
A 		174.5
(0.9)
A 		191.2
(2.2)
P 		200.6
(3)
P 		74
B 76.8
(-3)
A 		188.2
(3)
A 		134.7
(0.1)
M 		168.3
(1.9)
P 		111
C 79.3
(-3)
A 		166.9
(2.8)
A 		143.5
(1.3)
P 		169.8
(3)
P 		91
avr 94.4
(-3) 		176.5
(2.8) 		156.5
(1.4) 		179.6
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 171.6
(0.2)
A 		96.6
(-2.7)
A 		87.8
(-3)
A 		147.1
(-0.7)
A 		242.8
(3)
P 		147
(-0.7)
A 		155
B 128.1
(1.2)
A 		134.4
(1.9)
A 		90.3
(-3)
A 		144.2
(3)
A 		140.9
(2.6)
M 		104.8
(-1.4)
P 		54
C 131.7
(1.9)
A 		134.5
(2.2)
A 		121.4
(0.8)
A 		84.9
(-3)
A 		121
(0.8)
A 		142.5
(3)
M 		58
avr 143.8
(0.9) 		121.8
(-1.1) 		99.8
(-3) 		125.4
(-0.8) 		168.2
(3) 		131.4
(-0.2) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 46.3
(1.9)
A 		37.9
(-0.5)
A 		50
(3)
P 		29.4
(-3)
P 		21
B 24.5
(-3)
A 		46.5
(3)
A 		31.2
(-1.2)
M 		35.9
(0.1)
P 		22
C 26.2
(-3)
A 		48
(2.5)
A 		50
(3)
P 		28.6
(-2.4)
P 		24
avr 32.3
(-2.5) 		44.1
(3) 		43.7
(2.8) 		31.3
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 31.6
(-1.6)
A 		34.4
(-1.3)
A 		19.1
(-3)
A 		37.3
(-1)
A 		73.3
(3)
P 		35.8
(-1.2)
A 		54
B 44.6
(0.9)
A 		44.7
(0.9)
A 		21.9
(-3)
A 		38.2
(-0.2)
A 		57.2
(3)
M 		39.1
(-0.1)
P 		35
C 48.8
(3)
A 		41
(1.5)
A 		30.9
(-0.4)
A 		17.1
(-3)
A 		39.2
(1.2)
A 		47.7
(2.8)
M 		32
avr 41.7
(0.3) 		40
(-0.1) 		24
(-3) 		30.9
(-1.7) 		56.6
(3) 		40.9
(0.1) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184920_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4452
Sequence Type Exemplar sequence
Representative Public ID F48A11.5 NCBI
Target Description F48A11.5 /REP_DB=WormBase Gene ID /WP=CE10730 /TR=O17370 /GB=AAB71287.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027010(11), NM_001027009(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027010 NCBI Caenorhabditis elegans F48A11.5b (F48A11.5) mRNA, complete cds. 11/11 None
NM_001027009 NCBI Caenorhabditis elegans F48A11.5a (F48A11.5) mRNA, complete cds. 11/11 None
SNAP00000036187 ENSEMBL cdna:SNAP chromosome:CEL140:II:217317:220136:-1 11/11 None
GENEFINDER00000036192 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:217317:220620:-1 11/11 None
F48A11.5b ENSEMBL cdna:known chromosome:CEL140:II:217298:220640:-1 gene:F48A11.5 11/11 None
F48A11.5a ENSEMBL cdna:known chromosome:CEL140:II:217317:220620:-1 gene:F48A11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:217316-220620(-) 100.0 100.0
Public Domain and Genome References
Ensembl F48A11.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT81192 Hypothetical protein F48A11.5b [Caenorhabditis elegans] ref|NP_001022181.1| F48A11.5b [Caenorhabditis elegans] 0.0
blast AAB71287 Hypothetical protein F48A11.5a [Caenorhabditis elegans] ref|NP_001022180.1| F48A11.5a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:184920_S_AT
ttcccgttgatggctatcgttgtcaaggagcgaaactcgtatcgtctcgtggattactgt
agaggaaccgataccagtgaccaagtgatggagaagcttttgagcggtgtctcggagtac
tcggatattcgaatgaatgaacaatctgagagacgagagcgtgaagaacgagaggctatt
cggaatcagcaggaggctgagtataaggcatctctggctgctgacaaggcacgtatggag
gctaaacagcaagaaattgaggagcagcgtcttgaggaggaacgcaaacttcgtgaggag
gaggaagaatgtgtccgtcgtcaaactgtcgcctctacagttccagaagagccaccagcg
agtgctccacttgctgagattatcaatgtcaagtttagattgccagaaggtggacaggat
atgcgtcgtttccgtcgcctcgaatcgatccagacactgatcaactatttgtcgtcaaag
ggatactcgccggacaagtttaaatatttcaactcggatttcccgaaaaaggagattact
cgccactttgatttgtctcacaactttgccgacacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCCGTTGATGGCTATCGTTGTCA 569 697 1294 Antisense
AGGAGCGAAACTCGTATCGTCTCGT 557 55 1319 Antisense
GGAACCGATACCAGTGACCAAGTGA 526 527 1357 Antisense
GAAGCTTTTGAGCGGTGTCTCGGAG 387 341 1386 Antisense
GTATAAGGCATCTCTGGCTGCTGAC 89 455 1494 Antisense
GAATGTGTCCGTCGTCAAACTGTCG 370 331 1600 Antisense
AGAAGAGCCACCAGCGAGTGCTCCA 15 75 1638 Antisense
GAGTGCTCCACTTGCTGAGATTATC 658 399 1653 Antisense
GGACAGGATATGCGTCGTTTCCGTC 473 521 1705 Antisense
TTACTCGCCACTTTGATTTGTCTCA 303 683 1829 Antisense
TTGTCTCACAACTTTGCCGACACCA 33 709 1846 Antisense
Sequence Source Affymetrix Proprietary Database