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[184919_s_at]

Description F32E10.5 /REP_DB=WormBase Gene ID /WP=CE04478 /TR=Q19971 /GB=AAA83356.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 92      6grp_total > 97      4grp_total > 23      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 224.9
(3)
P 		155.1
(-2.6)
P 		149.8
(-3)
P 		210.7
(1.9)
P 		75
B 200
(3)
P 		155.5
(-2.9)
P 		155.1
(-3)
P 		177.7
(0)
P 		45
C 255.5
(3)
P 		156.9
(-3)
P 		174.3
(-1.9)
P 		240.7
(2.1)
P 		99
avr 226.8
(3) 		155.8
(-3) 		159.7
(-2.7) 		209.7
(1.6) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 364
1 2 3 4 5 6 range
A 197.1
(-3)
P 		225.1
(-2.4)
P 		236.9
(-2.1)
P 		355.5
(0.4)
P 		412.7
(1.6)
P 		477.7
(3)
P 		281
B 221.7
(-3)
P 		229.5
(-2.9)
P 		234.2
(-2.8)
P 		255.2
(-2.4)
P 		477.6
(1.7)
P 		547
(3)
P 		325
C 220.2
(-2.7)
P 		201.3
(-3)
P 		260.6
(-2)
P 		260.5
(-2)
P 		387.3
(0.1)
P 		561.5
(3)
P 		360
avr 213
(-3) 		218.6
(-2.9) 		243.9
(-2.4) 		290.4
(-1.5) 		425.9
(1) 		528.7
(3) 		316
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 81.9
(3)
P 		33.7
(-2.7)
P 		39.2
(-2)
P 		30.8
(-3)
P 		51
B 63.8
(3)
P 		38.4
(-2.5)
P 		35.9
(-3)
P 		37.9
(-2.6)
P 		28
C 84.6
(3)
P 		45.1
(-2.4)
P 		60.7
(-0.3)
P 		40.6
(-3)
P 		44
avr 76.8
(3) 		39.1
(-2.6) 		45.3
(-1.7) 		36.4
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 36.3
(-3)
P 		80
(-0)
P 		51.6
(-2)
P 		90.2
(0.7)
P 		124.5
(3)
P 		116.3
(2.4)
P 		88
B 77.1
(-2.2)
P 		76.4
(-2.2)
P 		56.9
(-3)
P 		67.6
(-2.6)
P 		194
(2.6)
P 		204
(3)
P 		147
C 81.6
(-1.7)
P 		61.4
(-2.6)
P 		66.3
(-2.4)
P 		52.4
(-3)
P 		125.3
(0.2)
P 		188
(3)
P 		136
avr 65
(-2.6) 		72.6
(-2.2) 		58.3
(-3) 		70.1
(-2.4) 		147.9
(1.8) 		169.4
(3) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184919_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8666
Sequence Type Exemplar sequence
Representative Public ID F32E10.5 NCBI
Target Description F32E10.5 /REP_DB=WormBase Gene ID /WP=CE04478 /TR=Q19971 /GB=AAA83356.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068829(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068829 NCBI Caenorhabditis elegans F32E10.5 (F32E10.5) mRNA, complete cds. 11/11 None
SNAP00000038465 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7574416:7575896:-1 11/11 None
GENEFINDER00000038475 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7574416:7575896:-1 11/11 None
F32E10.5 ENSEMBL cdna:known chromosome:CEL140:IV:7574416:7578365:-1 gene:F32E10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7574421-7578353(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32E10.5
Entrez Gene 177535 Entrez gene
SwissProt Q19971 EMBL-EBI
WormBase CE04478 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
7169 transmembrane receptor protein tyrosine kinase signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83356 Hypothetical protein F32E10.5 [Caenorhabditis elegans] ref|NP_501230.1| F32E10.5 [Caenorhabditis elegans] 0.0
blast AAA83356 Hypothetical protein F32E10.5 [Caenorhabditis elegans] ref|NP_501230.1| F32E10.5 [Caenorhabditis elegans] 1.0E-180
blast CAE61919 Hypothetical protein CBG05915 [Caenorhabditis briggsae] 1.0E-155
blast CAE61919 Hypothetical protein CBG05915 [Caenorhabditis briggsae] 1.0E-85
blast CAE72983 Hypothetical protein CBG20325 [Caenorhabditis briggsae] 7.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR008191 EMBL-EBI Maternal tudor protein 5.7E-25
Sequence
Target Sequence 
>C. ELEGANS:184919_S_AT
agaatccctagaatcgttaccagacgtctggatggcttatggtacatcatgctctgtatt
ccatcaaggcaccatgaaaagagcttcttgttgtggagaggaaggctcgactattcagct
tttactcatcgattatggaataagtatagaagtgtccaaatccgatgtgtacaacattcc
taacaaggatgaagtcaatatggaaccttttgtgacccttgtttcaatcaaatcatttcc
attcattcattattctcgcgttaaaatccttcaagaacttcttcctcgtggaactcctgt
caaatttcaccgtgacaggaaatgtaaagaaattccaacaaagggcgagatttatcaaat
gaatggaacatctgtggagcaatctgtcagtgaaatagtatcatcttgccaactggatct
cgaatgcaattctcttttaccttcccgtattgcaaataatgaactcacacaattactggc
ttact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAATCCCTAGAATCGTTACCAGAC 448 75 1098 Antisense
TGGCTTATGGTACATCATGCTCTGT 321 545 1130 Antisense
GCTCTGTATTCCATCAAGGCACCAT 222 299 1148 Antisense
GACTATTCAGCTTTTACTCATCGAT 302 373 1206 Antisense
CCTTTTGTGACCCTTGTTTCAATCA 362 267 1303 Antisense
TCCATTCATTCATTATTCTCGCGTT 315 591 1335 Antisense
CAAGAACTTCTTCCTCGTGGAACTC 347 183 1369 Antisense
GAACTCCTGTCAAATTTCACCGTGA 442 349 1388 Antisense
GTATCATCTTGCCAACTGGATCTCG 164 455 1495 Antisense
CGAATGCAATTCTCTTTTACCTTCC 193 253 1518 Antisense
GAACTCACACAATTACTGGCTTACT 292 349 1558 Antisense
Sequence Source Affymetrix Proprietary Database