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[184918_at]

Description K09E10.1 /REP_DB=WormBase Gene ID /WP=CE12016 /TR=O01857 /GB=AAC48044.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 25      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 15
(-2.8)
A 		13.8
(-3)
A 		30.5
(-0.5)
A 		53.5
(3)
A 		40
B 28.1
(-3)
A 		56.1
(3)
A 		45.1
(0.6)
P 		43.1
(0.2)
P 		28
C 4.9
(-3)
A 		62.2
(3)
P 		20.8
(-1.3)
A 		61.6
(2.9)
P 		57
avr 16
(-3) 		44
(1.6) 		32.1
(-0.4) 		52.7
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 57.5
(3)
A 		39.2
(-1.5)
P 		45.2
(0)
P 		50.6
(1.3)
A 		32.9
(-3)
A 		33.9
(-2.8)
A 		25
B 44.1
(2.2)
P 		49.4
(3)
P 		41.5
(1.8)
A 		43.8
(2.1)
A 		33.5
(0.5)
M 		11.4
(-3)
A 		38
C 24.6
(-1.9)
A 		54.1
(3)
M 		36.7
(0.1)
P 		31.8
(-0.7)
A 		18.3
(-3)
A 		30.5
(-1)
P 		36
avr 42.1
(1.5) 		47.6
(3) 		41.1
(1.3) 		42.1
(1.5) 		28.2
(-2.2) 		25.3
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.5
(0)
A 		3
(-3)
A 		8
(3)
A 		7.8
(2.8)
A 		5
B 9
(-3)
A 		13.9
(3)
A 		10.5
(-1.2)
P 		9.2
(-2.8)
P 		5
C 1.6
(-3)
A 		17.9
(3)
P 		7.3
(-0.9)
A 		10.4
(0.2)
P 		16
avr 5.4
(-3) 		11.6
(3) 		8.6
(0.1) 		9.1
(0.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 10.6
(-0.5)
A 		14
(3)
P 		9.8
(-1.3)
P 		12.8
(1.8)
A 		9.9
(-1.2)
A 		8.2
(-3)
A 		6
B 15.3
(2.5)
P 		16.4
(3)
P 		10.1
(-0.1)
A 		11.6
(0.6)
A 		13.6
(1.6)
M 		4.3
(-3)
A 		12
C 9.1
(-1.2)
A 		16.5
(3)
M 		9.3
(-1.1)
P 		6.4
(-2.7)
A 		5.9
(-3)
A 		10.2
(-0.6)
P 		11
avr 11.7
(0.1) 		15.6
(3) 		9.7
(-1.4) 		10.3
(-1) 		9.8
(-1.4) 		7.6
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184918_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9478
Sequence Type Exemplar sequence
Representative Public ID K09E10.1 NCBI
Target Description K09E10.1 /REP_DB=WormBase Gene ID /WP=CE12016 /TR=O01857 /GB=AAC48044.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069943(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069943 NCBI Caenorhabditis elegans K09E10.1 (K09E10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000013653 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12304435:12311577:-1 11/11 None
K09E10.1 ENSEMBL cdna:known chromosome:CEL140:IV:12304435:12307791:-1 gene:K09E10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013649 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12304440-12307797(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09E10.1
Entrez Gene 187224 Entrez gene
SwissProt O01857 EMBL-EBI
WormBase CE12016 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48044 Hypothetical protein K09E10.1 [Caenorhabditis elegans] ref|NP_502344.1| K09E10.1 [Caenorhabditis elegans] 0.0
blast AAC48045 Hypothetical protein K09E10.2 [Caenorhabditis elegans] ref|NP_502345.1| K09E10.2 [Caenorhabditis elegans] 0.0
blast NP_502342 C42C1.7 [Caenorhabditis elegans] gb|AAB97548.2| Hypothetical protein C42C1.7 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 7.0E-61
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502344.1 9 12-31,41-63,76-95,146-163,168-185,195-212,270-292,347-364,377-399
K09E10.1 9 12-31,41-63,76-95,146-163,168-185,195-212,270-292,347-364,377-399
GENEFINDER00000013653 15 12-34,49-71,78-97,148-167,172-194,282-304,316-338,348-365,372-394,704-726,733-750,760-777,835-857,912-929,942-964
Sequence
Target Sequence 
>C. ELEGANS:184918_AT
agtgaatggctgtgaaccgttggcagccaacacaactggatgtataaagaaactcgacga
gtttgtgcagttattgaacagttccaaaccagactacgcatttctgcttacaagattctt
tgtcatagccaatccgttcaccgatgtaaatactgaaaatgatgaaatatatattcaaat
gaaaagtcaactcaagaaattcctgccaaatattaagaagaagttgtatattttagattc
attcccaagagtacatggggatgtgattccgcacattgcggatgacttgaaagatggaaa
gacattcgaagaaattagtaaagccctgttacgaccagatggatatgaaagaggtcgtct
tcgacatgctgctctcgttcaagaatgtggtgacaaatgtgaattaattgattatcttcc
attattctggaacaattctacacatctttatcagtattttgactcacgtggatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGAATGGCTGTGAACCGTTGGCA 624 1 1527 Antisense
TTGGCAGCCAACACAACTGGATGTA 697 683 1546 Antisense
CTCGACGAGTTTGTGCAGTTATTGA 328 233 1579 Antisense
GAACAGTTCCAAACCAGACTACGCA 535 351 1602 Antisense
GACTACGCATTTCTGCTTACAAGAT 431 373 1618 Antisense
GATTCTTTGTCATAGCCAATCCGTT 558 431 1640 Antisense
TAGCCAATCCGTTCACCGATGTAAA 165 649 1652 Antisense
GTCAACTCAAGAAATTCCTGCCAAA 192 465 1712 Antisense
TTTAGATTCATTCCCAAGAGTACAT 371 669 1758 Antisense
TGGGGATGTGATTCCGCACATTGCG 584 553 1782 Antisense
ATCAGTATTTTGACTCACGTGGATT 566 29 1976 Antisense
Sequence Source Affymetrix Proprietary Database