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[184917_at]

Description T20D4.17 /REP_DB=WormBase Gene ID /WP=CE13810 /TR=P91462 /GB=AAB37584.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 3.1
(-3)
A 		11.3
(-1.4)
A 		12.7
(-1.2)
A 		34.7
(3)
A 		32
B 9.8
(2.8)
A 		3.6
(-3)
A 		10
(3)
A 		7.2
(0.4)
A 		6
C 10
(-2.3)
A 		30.7
(0)
A 		3.2
(-3)
A 		57.6
(3)
A 		54
avr 7.6
(-3) 		15.2
(-1.2) 		8.6
(-2.8) 		33.2
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 5.6
(-2.8)
A 		5.6
(-2.8)
A 		9.6
(-2.3)
A 		20.8
(-0.9)
A 		4.2
(-3)
A 		51.3
(3)
A 		47
B 3.1
(-2.8)
A 		2.1
(-3)
A 		4.7
(-2.6)
A 		31.5
(1.6)
A 		3.1
(-2.8)
A 		40.1
(3)
A 		38
C 5.2
(-2)
A 		6.8
(-1.5)
A 		2.8
(-2.7)
A 		9
(-0.8)
A 		1.9
(-3)
A 		21.2
(3)
A 		19
avr 4.6
(-2.7) 		4.8
(-2.7) 		5.7
(-2.5) 		20.4
(0) 		3.1
(-3) 		37.5
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.1
(-3)
A 		2.5
(-0.9)
A 		3.3
(0.3)
A 		5.1
(3)
A 		4
B 3.1
(3)
A 		0.9
(-3)
A 		2.3
(0.8)
A 		1.5
(-1.4)
A 		2
C 3.3
(-1.5)
A 		8.8
(2.4)
A 		1.1
(-3)
A 		9.7
(3)
A 		9
avr 2.5
(-2.4) 		4.1
(0.6) 		2.2
(-3) 		5.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1
(-3)
A 		2
(-2.5)
A 		2.1
(-2.4)
A 		5.3
(-0.8)
A 		1.3
(-2.8)
A 		12.5
(3)
A 		12
B 1.1
(-2.8)
A 		0.7
(-3)
A 		1.1
(-2.8)
A 		8.3
(0.2)
A 		1.3
(-2.7)
A 		15
(3)
A 		14
C 1.9
(-1.8)
A 		2.1
(-1.6)
A 		0.7
(-2.9)
A 		1.8
(-1.9)
A 		0.6
(-3)
A 		7.1
(3)
A 		7
avr 1.3
(-2.9) 		1.6
(-2.7) 		1.3
(-2.9) 		5.1
(-0.7) 		1.1
(-3) 		11.5
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184917_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15761
Sequence Type Exemplar sequence
Representative Public ID T20D4.17 NCBI
Target Description T20D4.17 /REP_DB=WormBase Gene ID /WP=CE13810 /TR=P91462 /GB=AAB37584.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071547(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071547 NCBI Caenorhabditis elegans T20D4.17 (T20D4.17) mRNA, complete cds. 11/11 None
SNAP00000008843 ENSEMBL cdna:SNAP chromosome:CEL140:V:3395364:3395792:-1 11/11 None
GENEFINDER00000008861 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3395126:3395792:-1 11/11 None
T20D4.17 ENSEMBL cdna:known chromosome:CEL140:V:3395364:3395792:-1 gene:T20D4.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3395363-3395792(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T20D4.17
Entrez Gene 188652 Entrez gene
SwissProt P91462 EMBL-EBI
WormBase CE13810 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37584 Hypothetical protein T20D4.17 [Caenorhabditis elegans] ref|NP_503948.1| T20D4.17 [Caenorhabditis elegans] 4.0E-69
blast AAB37584 Hypothetical protein T20D4.17 [Caenorhabditis elegans] ref|NP_503948.1| T20D4.17 [Caenorhabditis elegans] 1.0E-60
blast NP_503904 T28A11.3 [Caenorhabditis elegans] gb|AAC48115.1| Hypothetical protein T28A11.3 [Caenorhabditis elegans] 3.0E-35
blast AAC04397 Hypothetical protein C17B7.3 [Caenorhabditis elegans] ref|NP_503928.1| C17B7.3 [Caenorhabditis elegans] 1.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 6.2E-38
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 3.9E-29
Sequence
Target Sequence 
>C. ELEGANS:184917_AT
ttttcttcaatttgccgccattggaactattatcttaggagtggcccatggagctcctgc
tgatctcaaacccaactgcactggtgaaacacccgatgaacttttttgccgctttcgcct
gactgagttcaccggaaaaatcgacaagcttaatatgaataacaaagatgagctgaacga
attcaagacgtcttgcgattctctgcagaaatgcttcgccaatctcacatgttctttaca
aaatgagaaaggagagtcagcgctgaagactgtggaaaagtattgcgatgctcttgtgta
cttacacacggattttgccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTTCAATTTGCCGCCATTGGA 136 677 21 Antisense
GCCGCCATTGGAACTATTATCTTAG 39 287 34 Antisense
ATCTTAGGAGTGGCCCATGGAGCTC 693 29 52 Antisense
TGATCTCAAACCCAACTGCACTGGT 231 563 81 Antisense
ACACCCGATGAACTTTTTTGCCGCT 71 109 109 Antisense
TCGCCTGACTGAGTTCACCGGAAAA 411 599 135 Antisense
CAAGACGTCTTGCGATTCTCTGCAG 428 183 204 Antisense
TCTGCAGAAATGCTTCGCCAATCTC 413 609 222 Antisense
TCGCCAATCTCACATGTTCTTTACA 405 599 236 Antisense
ATTGCGATGCTCTTGTGTACTTACA 438 7 302 Antisense
GTACTTACACACGGATTTTGCCAAG 95 461 318 Antisense
Sequence Source Affymetrix Proprietary Database