[Home] | [Total List]

[184916_at]

Description Y49F6B.2 /REP_DB=WormBase Gene ID /WP=CE25336 /TR=Q9N4U1 /GB=AAF60729.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 68      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 81      6grp_total > 59      4grp_total > 16      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 340.6
(-3)
P 		379.3
(-1.9)
P 		425
(-0.7)
P 		557.4
(3)
P 		217
B 312.7
(-3)
P 		387.8
(-1.1)
P 		370.6
(-1.5)
P 		546
(3)
P 		233
C 377.6
(-2.4)
P 		352.4
(-3)
P 		455.8
(-0.4)
P 		592.2
(3)
P 		240
avr 343.6
(-3) 		373.2
(-2.2) 		417.1
(-1) 		565.2
(3) 		222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 256.1
(-0.3)
P 		218.3
(-2.2)
P 		203.2
(-3)
P 		320.1
(3)
P 		232.1
(-1.5)
P 		314.3
(2.7)
P 		117
B 291.3
(1.6)
P 		303.2
(2.1)
P 		186.1
(-3)
P 		266
(0.5)
P 		281.8
(1.1)
P 		324.5
(3)
P 		138
C 315
(0.1)
P 		246.5
(-1.6)
P 		250.2
(-1.5)
P 		192
(-3)
P 		293.7
(-0.4)
P 		429.6
(3)
P 		238
avr 287.5
(0.1) 		256
(-1.2) 		213.2
(-3) 		259.4
(-1.1) 		269.2
(-0.6) 		356.1
(3) 		143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 124
(3)
P 		82.3
(-2.9)
P 		111.1
(1.2)
P 		81.6
(-3)
P 		42
B 99.7
(-0.3)
P 		95.8
(-1)
P 		85.9
(-3)
P 		116.3
(3)
P 		30
C 125
(-0.4)
P 		101.3
(-2.8)
P 		158.9
(3)
P 		99.8
(-3)
P 		59
avr 116.2
(2.4) 		93.1
(-3) 		118.6
(3) 		99.2
(-1.6) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 47.2
(-2.5)
P 		77.6
(2.4)
P 		44.2
(-3)
P 		81.2
(3)
P 		70
(1.2)
P 		76.5
(2.2)
P 		37
B 101.4
(1.4)
P 		100.9
(1.4)
P 		45.2
(-3)
P 		70.5
(-1)
P 		114.5
(2.5)
P 		121
(3)
P 		76
C 116.8
(1.5)
P 		75.2
(-0.9)
P 		63.7
(-1.6)
P 		38.6
(-3)
P 		95
(0.2)
P 		143.8
(3)
P 		105
avr 88.5
(0.6) 		84.6
(0.2) 		51
(-3) 		63.4
(-1.8) 		93.2
(1) 		113.8
(3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184916_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4223
Sequence Type Exemplar sequence
Representative Public ID Y49F6B.2 NCBI
Target Description Y49F6B.2 /REP_DB=WormBase Gene ID /WP=CE25336 /TR=Q9N4U1 /GB=AAF60729.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062162(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062162 NCBI Caenorhabditis elegans Y49F6B.2 (Y49F6B.2) mRNA, complete cds. 11/11 None
SNAP00000021099 ENSEMBL cdna:SNAP chromosome:CEL140:II:3493730:3504821:1 11/11 None
GENEFINDER00000021113 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3502969:3504821:1 11/11 None
Y49F6B.2 ENSEMBL cdna:known chromosome:CEL140:II:3502963:3504872:1 gene:Y49F6B.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3502967-3504820(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y49F6B.2
Entrez Gene 173696 Entrez gene
SwissProt Q9N4U1 EMBL-EBI
WormBase CE25336 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1602032_AT similar to estrogen receptor binding protein cfa
CANINE:1594323_S_AT similar to estrogen receptor binding protein cfa
CANINE_2:CFA.20735.1.S1_S_AT similar to estrogen receptor binding protein cfa
CANINE_2:CFAAFFX.30814.1.S1_AT similar to estrogen receptor binding protein cfa
CHICKEN:GGA.2025.1.S1_AT similar to estrogen receptor binding protein gga
HG-U95AV2:37938_AT estrogen receptor binding protein hs
HG-FOCUS:202776_AT estrogen receptor binding protein hs
HG-U133A:202776_AT estrogen receptor binding protein hs
HG-U133_PLUS_2:202776_AT estrogen receptor binding protein hs
HG-U133A_2:202776_AT estrogen receptor binding protein hs
HUGENEFL:U15552_AT estrogen receptor binding protein hs
U133_X3P:G7657203_3P_AT estrogen receptor binding protein hs
HG-U95E:73067_AT estrogen receptor binding protein hs
MU11KSUBA:AA163090_S_AT RIKEN cDNA 4930588M11 gene mm
MG-U74AV2:160279_AT RIKEN cDNA 4930588M11 gene mm
MOE430A:1427882_AT RIKEN cDNA 4930588M11 gene mm
MOUSE430A_2:1427882_AT RIKEN cDNA 4930588M11 gene mm
MOUSE430_2:1427882_AT RIKEN cDNA 4930588M11 gene mm
MOE430A:1427881_AT RIKEN cDNA 4930588M11 gene mm
MOUSE430A_2:1427881_AT RIKEN cDNA 4930588M11 gene mm
MOUSE430_2:1427881_AT RIKEN cDNA 4930588M11 gene mm
MU19KSUBA:TC20822_AT RIKEN cDNA 4930588M11 gene (4930588M11Rik), mRNA mm
MU19KSUBA:TC22105_AT RIKEN cDNA 4930588M11 gene (4930588M11Rik), mRNA mm
MU19KSUBA:TC22105_G_AT RIKEN cDNA 4930588M11 gene (4930588M11Rik), mRNA mm
RAE230B:1382119_AT similar to expressed sequence AA408582 (predicted) rn
RAT230_2:1382119_AT similar to expressed sequence AA408582 (predicted) rn
RAE230B:1383256_AT similar to expressed sequence AA408582 (predicted) rn
RAT230_2:1383256_AT similar to expressed sequence AA408582 (predicted) rn
RG-U34B:RC_AA900652_AT Similar to expressed sequence AA408582 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_494563 Y49F6B.2 [Caenorhabditis elegans] gb|AAF60729.1| Hypothetical protein Y49F6B.2 [Caenorhabditis elegans] 1.0E-128
blast CAE70952 Hypothetical protein CBG17763 [Caenorhabditis briggsae] 1.0E-103
blast XP_693372 PREDICTED: similar to estrogen receptor binding protein [Danio rerio] 8.0E-32
Protein Domains
Database ID Description E-Value
scop a.1.1.Truncated hemoglobin All alpha proteins; Globin-like; Globin-like; Truncated hemoglobin 0.75
scop a.1.1.Truncated hemoglobin All alpha proteins; Globin-like; Globin-like; Truncated hemoglobin 0.469999998807907
Sequence
Target Sequence 
>C. ELEGANS:184916_AT
gatttcgtcgttgacagagccgtacgtgaagaagcgccaaaagaaggagcttttgaggca
gttgacctgctcggaacatcctatttggagccatatgagatggataaggacttgcaggag
cttctggaaaagtcagttgtcgggccgaagtttgaaggcgatcatcagcctcaaaatagg
cttttaggccggaatgcggccgccaggctgaagaaatcagaacgcgaaaaaaccaaagga
tccgcttggttcaaccttccagcgacggagctcaccgatgagcacaaacgagatttggaa
ttccttcaaatgagatcaactctcgatccattggctcattatcgtcgaaatgaccgggct
gtactgccgaaatacttccaagttggacgagtcgttgacgctccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTCGTCGTTGACAGAGCCGTAC 515 427 148 Antisense
GAGCCGTACGTGAAGAAGCGCCAAA 28 385 164 Antisense
GGAGCTTTTGAGGCAGTTGACCTGC 183 521 193 Antisense
TGACCTGCTCGGAACATCCTATTTG 95 571 210 Antisense
GAAAAGTCAGTTGTCGGGCCGAAGT 635 349 274 Antisense
AATGCGGCCGCCAGGCTGAAGAAAT 83 167 340 Antisense
CAAAGGATCCGCTTGGTTCAACCTT 117 193 381 Antisense
TCAACTCTCGATCCATTGGCTCATT 219 631 463 Antisense
GTCGAAATGACCGGGCTGTACTGCC 444 473 491 Antisense
GGCTGTACTGCCGAAATACTTCCAA 617 539 504 Antisense
TTGGACGAGTCGTTGACGCTCCAGA 407 709 530 Antisense
Sequence Source Affymetrix Proprietary Database