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[184915_at] 7TM chemoreceptor, srt family

Description C50H11.4 /REP_DB=WormBase Gene ID /WP=CE08920 /TR=O16478 /GB=AAG23992.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 26      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 50.7
(-1.8)
A 		51.8
(-1.6)
A 		42.2
(-3)
A 		84.4
(3)
P 		42
B 10
(-3)
A 		62.8
(1.1)
P 		21.3
(-2.1)
A 		87.3
(3)
P 		77
C 24.8
(-3)
A 		78.4
(3)
M 		46.8
(-0.5)
A 		77.2
(2.9)
P 		54
avr 28.5
(-3) 		64.3
(0.9) 		36.8
(-2.1) 		83
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 32.4
(1.1)
A 		12
(-2)
A 		45.2
(3)
A 		5.7
(-3)
A 		28.8
(0.5)
A 		8.9
(-2.5)
A 		40
B 4.1
(-3)
A 		6.4
(-2.8)
A 		68.7
(3)
A 		17.3
(-1.8)
A 		49.7
(1.2)
A 		28.2
(-0.8)
A 		65
C 13.9
(-3)
A 		24.8
(-1.2)
A 		49.8
(3)
A 		18.8
(-2.2)
A 		30.2
(-0.3)
A 		32.3
(0.1)
A 		36
avr 16.8
(-2.6) 		14.4
(-2.9) 		54.6
(3) 		13.9
(-3) 		36.2
(0.3) 		23.1
(-1.6) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 18.4
(3)
A 		11.2
(-2.8)
A 		11
(-3)
A 		12.4
(-1.9)
P 		7
B 3.2
(-3)
A 		15.5
(1.8)
P 		4.9
(-2.3)
A 		18.6
(3)
P 		15
C 8.2
(-3)
A 		22.5
(3)
M 		16.3
(0.4)
A 		13
(-1)
P 		14
avr 9.9
(-3) 		16.4
(3) 		10.7
(-2.3) 		14.7
(1.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 6
(0.2)
A 		4.3
(-1)
A 		9.9
(3)
A 		1.4
(-3)
A 		8.7
(2.2)
A 		2.2
(-2.4)
A 		9
B 1.4
(-3)
A 		2.1
(-2.8)
A 		16.7
(1.9)
A 		4.6
(-2)
A 		20.2
(3)
A 		10.5
(-0.1)
A 		19
C 5.2
(-2.1)
A 		7.6
(-0.4)
A 		12.7
(3)
A 		3.8
(-3)
A 		9.8
(1)
A 		10.8
(1.7)
A 		9
avr 4.2
(-2.4) 		4.7
(-2.1) 		13.1
(3) 		3.3
(-3) 		12.9
(2.9) 		7.8
(-0.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184915_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15750
Sequence Type Exemplar sequence
Representative Public ID C50H11.4 NCBI
Target Description C50H11.4 /REP_DB=WormBase Gene ID /WP=CE08920 /TR=O16478 /GB=AAG23992.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071441(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071441 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-7) (srt-7) mRNA, complete cds. 11/11 None
SNAP00000043566 ENSEMBL cdna:SNAP chromosome:CEL140:V:3081598:3082854:1 11/11 None
GENEFINDER00000043577 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3081610:3084391:1 9/11 None
C50H11.4 ENSEMBL cdna:known chromosome:CEL140:V:3081598:3082854:1 gene:C50H11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3081597-3082854(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-7
Ensembl C50H11.4
Entrez Gene 183694 Entrez gene
SwissProt O16478 EMBL-EBI
WormBase CE08920 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503842 Serpentine Receptor, class T family member (srt-7) [Caenorhabditis elegans] gb|AAG23992.1| Serpentine receptor, class t protein 7 [Caenorhabditis elegans] 0.0
blast NP_503842 Serpentine Receptor, class T family member (srt-7) [Caenorhabditis elegans] gb|AAG23992.1| Serpentine receptor, class t protein 7 [Caenorhabditis elegans] 1.0E-169
blast NP_504897 Serpentine Receptor, class T family member (srt-6) [Caenorhabditis elegans] gb|AAK72298.1| Serpentine receptor, class t protein 6 [Caenorhabditis elegans] 1.0E-143
blast NP_503844 Serpentine Receptor, class T family member (srt-8) [Caenorhabditis elegans] gb|AAG24003.1| Serpentine receptor, class t protein 8 [Caenorhabditis elegans] 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.1E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503842.1 7 36-58,71-93,108-130,151-173,201-223,244-266,271-293
C50H11.4 7 36-58,71-93,108-130,151-173,201-223,244-266,271-293
SNAP00000043566 7 36-58,71-93,108-130,151-173,201-223,244-266,271-293
GENEFINDER00000043577 8 32-54,67-89,104-126,147-169,197-219,240-262,267-289,331-353
Sequence
Target Sequence 
>C. ELEGANS:184915_AT
tttttcgtttcgtacttgttgcaatgataatgctcagcttttggtctttagtgtgcgtca
agcctgttctattttcacttcagtatagctgctggttttttgatccgatgaccggcaaag
atcctgcgttttttgtgagcacccctgataccattagcaatattattttgatagtctgta
catcaactctatatctttatctatcttacaatctgctcttcaagttcggatattccacat
caatttggctttataaaacaaaacggcagataatattccaagcagtgattctttgtgctt
ttcatgccgttgtcgctggaatttatgaatttatgatgttcttttacgcttcaccatcgc
taatcatcattagtcaaatactgtggggatggagcagtggctgcatgtgcatcgcatatt
tatcattcaaccgaacaattcgaaactcggtcgtaaaaatgataattccgaaagctattc
gaatacggtacgggttgcatgttggctttgaagagcacttggcacaaactgaagctgctc
atactttgggtactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTCGTTTCGTACTTGTTGCAAT 629 673 461 Antisense
ATAATGCTCAGCTTTTGGTCTTTAG 594 23 487 Antisense
TGGTCTTTAGTGTGCGTCAAGCCTG 19 553 502 Antisense
GTCAAGCCTGTTCTATTTTCACTTC 503 463 517 Antisense
GACCGGCAAAGATCCTGCGTTTTTT 702 379 570 Antisense
TTTTTTGTGAGCACCCCTGATACCA 460 675 589 Antisense
GTCTGTACATCAACTCTATATCTTT 619 471 634 Antisense
TGCTCTTCAAGTTCGGATATTCCAC 371 581 674 Antisense
TTTTCATGCCGTTGTCGCTGGAATT 464 675 759 Antisense
GGTACGGGTTGCATGTTGGCTTTGA 62 505 947 Antisense
GAAGCTGCTCATACTTTGGGTACTG 429 343 991 Antisense
Sequence Source Affymetrix Proprietary Database