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[184914_at]

Description T08E11.6 /REP_DB=WormBase Gene ID /WP=CE19573 /TR=O76637 /GB=AAC26314.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 63      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 43.3
(3)
A 		4.1
(-3)
A 		34.6
(1.7)
A 		10.4
(-2)
A 		39
B 6.7
(3)
A 		3.8
(-3)
A 		5.1
(-0.3)
A 		4.7
(-1.1)
A 		3
C 6.1
(-1.8)
A 		3.8
(-3)
A 		4.3
(-2.7)
A 		15.5
(3)
A 		12
avr 18.7
(3) 		3.9
(-3) 		14.7
(1.4) 		10.2
(-0.4) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 11.5
(-2.6)
A 		8.4
(-2.8)
A 		13.5
(-2.4)
A 		6.4
(-3)
A 		9
(-2.8)
A 		76.6
(3)
A 		70
B 9
(-1.9)
A 		8.7
(-2)
A 		3.3
(-3)
A 		5.5
(-2.6)
A 		13.2
(-1.2)
A 		35.5
(3)
A 		32
C 11.4
(-2.1)
A 		27.2
(0.4)
A 		20.3
(-0.7)
A 		7.2
(-2.7)
A 		5.6
(-3)
A 		43.8
(3)
A 		38
avr 10.6
(-2.4) 		14.8
(-1.9) 		12.4
(-2.2) 		6.4
(-3) 		9.3
(-2.6) 		52
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15.8
(3)
A 		0.9
(-3)
A 		9
(0.3)
A 		1.5
(-2.8)
A 		15
B 2.1
(3)
A 		0.9
(-3)
A 		1.2
(-1.5)
A 		1
(-2.5)
A 		1
C 2
(0.6)
A 		1.1
(-3)
A 		1.5
(-1.4)
A 		2.6
(3)
A 		2
avr 6.6
(3) 		1
(-3) 		3.9
(0.1) 		1.7
(-2.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.1
(-2.8)
A 		3
(-2.5)
A 		2.9
(-2.5)
A 		1.6
(-3)
A 		2.7
(-2.6)
A 		18.6
(3)
A 		17
B 3.1
(-1.9)
A 		2.9
(-2)
A 		0.8
(-3)
A 		1.5
(-2.7)
A 		5.4
(-0.8)
A 		13.2
(3)
A 		12
C 4.2
(-1.7)
A 		8.3
(0.1)
A 		5.2
(-1.3)
A 		1.4
(-3)
A 		1.8
(-2.8)
A 		14.7
(3)
A 		13
avr 3.1
(-2.3) 		4.7
(-1.6) 		3
(-2.4) 		1.5
(-3) 		3.3
(-2.2) 		15.5
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184914_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4216
Sequence Type Exemplar sequence
Representative Public ID T08E11.6 NCBI
Target Description T08E11.6 /REP_DB=WormBase Gene ID /WP=CE19573 /TR=O76637 /GB=AAC26314.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061682(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061682 NCBI Caenorhabditis elegans T08E11.6 (T08E11.6) mRNA, complete cds. 11/11 None
SNAP00000018367 ENSEMBL cdna:SNAP chromosome:CEL140:II:1817284:1819969:-1 11/11 None
GENEFINDER00000018378 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1817284:1819969:-1 11/11 None
T08E11.6 ENSEMBL cdna:known chromosome:CEL140:II:1817284:1818403:-1 gene:T08E11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1817282-1818402(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08E11.6
Entrez Gene 188288 Entrez gene
SwissProt O76637 EMBL-EBI
WormBase CE19573 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26314 Hypothetical protein T08E11.6 [Caenorhabditis elegans] ref|NP_494083.1| T08E11.6 [Caenorhabditis elegans] 0.0
blast AAC26313 Hypothetical protein T08E11.7 [Caenorhabditis elegans] ref|NP_494084.1| T08E11.7 [Caenorhabditis elegans] 1.0E-132
blast AAC26313 Hypothetical protein T08E11.7 [Caenorhabditis elegans] ref|NP_494084.1| T08E11.7 [Caenorhabditis elegans] 1.0E-129
blast AAB66215 Hypothetical protein F45C12.5 [Caenorhabditis elegans] ref|NP_494058.1| F45C12.5 [Caenorhabditis elegans] 1.0E-122
blast AAB66215 Hypothetical protein F45C12.5 [Caenorhabditis elegans] ref|NP_494058.1| F45C12.5 [Caenorhabditis elegans] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.5E-50
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.0E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.3E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.3E-4
Sequence
Target Sequence 
>C. ELEGANS:184914_AT
gggtttgacatgagagcctgctacagaaatctaaccgggctacatgttaccaagcttcac
ctaaatggagatcatctcccggatatccagatgttcggcagtcttccaaatgttgatgag
atttgtttcggatttaatctcccggtaggacctaactatcaacgaataattgctcgaaat
gttgaaaaattcacgatggagaacagcgatggcgcacaagtccaactgaatgacttgttg
gcttcgaatgcttggttcatccaacttaccaatatgtccctgccgaaccgtcaaatcaac
ttgttcctgaagcactggatagctggctcaaacgagatgctctgtggctttgtgataaat
caattcaacaatggggccggctacaacgaagctgtcatttccaacggaatcgactatcag
ccatcgatggaagagcatcatggagttcaggaaaacaattaccacctgcatccacatact
cgaaaatttgacataagaagggatgacgggatgcgggcaactttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTTTGACATGAGAGCCTGCTACA 171 497 475 Antisense
GGGCTACATGTTACCAAGCTTCACC 366 489 511 Antisense
TGGAGATCATCTCCCGGATATCCAG 434 549 540 Antisense
GATGTTCGGCAGTCTTCCAAATGTT 28 411 564 Antisense
ACAGCGATGGCGCACAAGTCCAACT 640 107 677 Antisense
GGCTTCGAATGCTTGGTTCATCCAA 202 537 714 Antisense
ATCCAACTTACCAATATGTCCCTGC 680 39 733 Antisense
ACGAGATGCTCTGTGGCTTTGTGAT 567 93 806 Antisense
TCAACAATGGGGCCGGCTACAACGA 139 623 839 Antisense
ACAACGAAGCTGTCATTTCCAACGG 67 113 857 Antisense
GATGACGGGATGCGGGCAACTTTCT 248 405 976 Antisense
Sequence Source Affymetrix Proprietary Database