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[184913_s_at]

Description T22F3.11 /REP_DB=WormBase Gene ID /WP=CE18279 /TR=Q94307 /GB=AAD56301.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 80      6grp_highest_nonorm > 43      6grp_total > 72      4grp_total > 23      6grp_highest_sub > 04_05      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 381
1 2 3 4 range
A 390.3
(3)
P 		88
(-3)
A 		109.8
(-2.6)
A 		289.5
(1)
P 		302
B 469.1
(3)
P 		99.6
(-3)
A 		136.2
(-2.4)
A 		370.8
(1.4)
P 		370
C 455.8
(3)
P 		130.1
(-3)
A 		131.9
(-3)
A 		412.8
(2.2)
P 		326
avr 438.4
(3) 		105.9
(-3) 		126
(-2.6) 		357.7
(1.5) 		333

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1587
1 2 3 4 5 6 range
A 412.6
(-2.1)
P 		1111.7
(1.1)
P 		1520.6
(3)
P 		1098.5
(1)
P 		1445.5
(2.7)
P 		225.2
(-3)
P 		1295
B 449.1
(-2)
P 		1041.3
(1.1)
P 		1249.3
(2.2)
P 		1297.8
(2.5)
P 		1399.6
(3)
P 		253.2
(-3)
P 		1146
C 427.8
(-2.4)
P 		968.2
(-0.3)
P 		1812.4
(3)
P 		1076.4
(0.1)
P 		1571.3
(2.1)
P 		270.4
(-3)
P 		1542
avr 429.8
(-2.2) 		1040.4
(0.7) 		1527.4
(3) 		1157.6
(1.3) 		1472.1
(2.7) 		249.6
(-3) 		1278
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 142.1
(3)
P 		19.1
(-3)
A 		28.7
(-2.5)
A 		42.4
(-1.9)
P 		123
B 149.6
(3)
P 		24.6
(-3)
A 		31.6
(-2.7)
A 		79
(-0.4)
P 		125
C 150.9
(3)
P 		37.4
(-3)
A 		46
(-2.5)
A 		69.6
(-1.3)
P 		114
avr 147.5
(3) 		27
(-3) 		35.4
(-2.6) 		63.7
(-1.2) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 514
1 2 3 4 5 6 range
A 76.1
(-2.7)
P 		395.4
(2.4)
P 		331.2
(1.3)
P 		278.6
(0.5)
P 		436.2
(3)
P 		54.8
(-3)
P 		381
B 156.3
(-2.2)
P 		346.6
(0.2)
P 		303.4
(-0.4)
P 		343.8
(0.2)
P 		568.7
(3)
P 		94.4
(-3)
P 		474
C 158.6
(-2)
P 		295.4
(-0.1)
P 		461.3
(2.3)
P 		216.5
(-1.2)
P 		508.4
(3)
P 		90.5
(-3)
P 		418
avr 130.3
(-2.3) 		345.8
(0.8) 		365.3
(1) 		279.6
(-0.2) 		504.4
(3) 		79.9
(-3) 		425
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184913_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15747
Sequence Type Exemplar sequence
Representative Public ID T22F3.11 NCBI
Target Description T22F3.11 /REP_DB=WormBase Gene ID /WP=CE18279 /TR=Q94307 /GB=AAD56301.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071614 NCBI Caenorhabditis elegans T22F3.11a (T22F3.11) mRNA, complete cds. 11/11 None
T22F3.11a ENSEMBL cdna:known chromosome:CEL140:V:3611988:3614330:-1 gene:T22F3.11 11/11 None
T22F3.11b ENSEMBL cdna:known chromosome:CEL140:V:3612019:3614366:-1 gene:T22F3.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182336 7/11 Cross Hyb Matching Probes None
SNAP00000031852 7/11 Cross Hyb Matching Probes None
GENEFINDER00000031854 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178782 2 1 NM_071614 173729_at (11), 184913_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3612272-3614330(-) 100.0 100.0
Public Domain and Genome References
Ensembl T22F3.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD56301 Hypothetical protein T22F3.11a [Caenorhabditis elegans] ref|NP_504015.1| T22F3.11a [Caenorhabditis elegans] 0.0
blast CAE66803 Hypothetical protein CBG12165 [Caenorhabditis briggsae] 0.0
blast H89006 protein T22F3.11 [imported] - Caenorhabditis elegans 0.0
blast AAO25986 Hypothetical protein T22F3.11b [Caenorhabditis elegans] ref|NP_872136.1| T22F3.11b [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504015.1 12 13-35,67-86,93-115,119-141,154-176,186-205,250-272,287-306,319-341,346-368,381-403,413-435
T22F3.11a 12 13-35,67-86,93-115,119-141,154-176,186-205,250-272,287-306,319-341,346-368,381-403,413-435
T22F3.11b 10 13-35,67-86,93-115,119-141,154-176,186-205,250-272,287-306,319-341,346-367
Sequence
Target Sequence 
>C. ELEGANS:184913_S_AT
ccagcccagtcatctggtgtgtctggctcaacgccttcttcgagatgtccgctgtgatcg
tctgctcaacttacatgccaatctacttccacgaggtgctcaagttcggagtcaccgaga
ccggcttctgggtggctctagtgctcttcatctggcttccagttcgatgggtggccgccg
tactcagtgacaagatccgctgcatcggagagctgccgaagattctgatcttcaacacaa
tcgcagttggaggtaccggagcattcttcgccgtcattgggttcatcccagccgagaaca
agtattggtccgttgccgcgtttaccatgactatgtgctgtgtgggtgtcaactctggcg
gattctacaaatgtggtgttcttcatgctcgccaatacgcccacgtggtcatcgccgcaa
ttcaatggaccaagtgtgtggcgctgttctccgcccctgcgatggttgctctcttcgtca
ccaccgaatcggtccgtacccagtggatcggtgtcttcctggttttcggtggcctcatgc
agatcaccaacttgctctcctactgcattttcaccgacaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGCCCAGTCATCTGGTGTGTCTG 81 273 746 Antisense
ATCGTCTGCTCAACTTACATGCCAA 530 35 802 Antisense
CTGGCTTCCAGTTCGATGGGTGGCC 542 239 897 Antisense
AGATCCGCTGCATCGGAGAGCTGCC 492 67 938 Antisense
TTGGAGGTACCGGAGCATTCTTCGC 252 707 992 Antisense
TGCCGCGTTTACCATGACTATGTGC 151 585 1059 Antisense
GTGTCAACTCTGGCGGATTCTACAA 685 485 1091 Antisense
GTCATCGCCGCAATTCAATGGACCA 489 467 1153 Antisense
TCCGTACCCAGTGGATCGGTGTCTT 609 593 1238 Antisense
TTCGGTGGCCTCATGCAGATCACCA 168 695 1270 Antisense
TCCTACTGCATTTTCACCGACAAGC 672 589 1303 Antisense
Sequence Source Affymetrix Proprietary Database