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[184912_s_at]

Description W04H10.4 /REP_DB=WormBase Gene ID /WP=CE14606 /TR=O44853 /GB=AAB95014.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 16.3
(-3)
A 		22.9
(-1.8)
A 		28.6
(-0.9)
A 		50.7
(3)
P 		34
B 13.3
(-0.7)
A 		31.4
(3)
A 		7.1
(-2)
A 		2.3
(-3)
A 		29
C 5.8
(-3)
A 		32.1
(-0.9)
A 		8.9
(-2.8)
A 		80.7
(3)
P 		75
avr 11.8
(-3) 		28.8
(0.1) 		14.9
(-2.4) 		44.6
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 2
(-3)
A 		6
(-2)
A 		27.9
(3)
A 		15.8
(0.2)
A 		1.8
(-3)
A 		3.8
(-2.5)
A 		26
B 6
(-1.7)
A 		20.5
(2.5)
A 		11.8
(-0)
A 		11.4
(-0.1)
A 		22.1
(3)
A 		1.6
(-3)
A 		21
C 4.4
(-2.6)
A 		34
(3)
A 		2.3
(-3)
A 		30.4
(2.3)
A 		24.7
(1.2)
A 		16.2
(-0.4)
A 		32
avr 4.1
(-3) 		20.2
(3) 		14
(0.7) 		19.2
(2.6) 		16.2
(1.5) 		7.2
(-1.8) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 5.9
(-0.8)
A 		5
(-3)
A 		7.5
(3)
A 		7.4
(2.8)
P 		3
B 4.2
(0)
A 		7.8
(3)
A 		1.6
(-2.1)
A 		0.5
(-3)
A 		7
C 1.9
(-3)
A 		9.2
(0.7)
A 		3.1
(-2.4)
A 		13.6
(3)
P 		12
avr 4
(-3) 		7.3
(3) 		4.1
(-2.8) 		7.2
(2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.4
(-3)
A 		2.1
(-1.2)
A 		6.1
(3)
A 		4
(0.8)
A 		0.5
(-2.9)
A 		0.9
(-2.5)
A 		6
B 2.1
(-1.9)
A 		6.8
(1.4)
A 		2.9
(-1.4)
A 		3
(-1.3)
A 		9
(3)
A 		0.6
(-3)
A 		8
C 1.6
(-2.4)
A 		10.4
(3)
A 		0.6
(-3)
A 		6.1
(0.4)
A 		8
(1.5)
A 		5.4
(-0.1)
A 		10
avr 1.4
(-3) 		6.4
(3) 		3.2
(-0.8) 		4.4
(0.6) 		5.8
(2.3) 		2.3
(-1.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184912_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5790
Sequence Type Exemplar sequence
Representative Public ID W04H10.4 NCBI
Target Description W04H10.4 /REP_DB=WormBase Gene ID /WP=CE14606 /TR=O44853 /GB=AAB95014.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061370(11), NM_064127(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061370 NCBI Caenorhabditis elegans W04H10.4 (W04H10.4) mRNA, complete cds. 11/11 A 
NM_064127 NCBI Caenorhabditis elegans T27D12.3 (T27D12.3) mRNA, complete cds. 11/11 None
SNAP00000015254 ENSEMBL cdna:SNAP chromosome:CEL140:II:609775:610924:-1 11/11 None
GENEFINDER00000015256 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:609775:610924:-1 11/11 None
SNAP00000038203 ENSEMBL cdna:SNAP chromosome:CEL140:II:11831450:11832247:-1 11/11 None
GENEFINDER00000038213 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11830442:11832480:-1 11/11 None
W04H10.4 ENSEMBL cdna:known chromosome:CEL140:II:609775:611071:-1 gene:W04H10.4 11/11 A 
T27D12.3 ENSEMBL cdna:known chromosome:CEL140:II:11831450:11832480:-1 gene:T27D12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:609774-611071(-) 100.0 100.0
chrII:11831125-11832468(-) 95.18 95.18
Public Domain and Genome References
Gene Title

Ensembl W04H10.4
T27D12.3
Entrez Gene 188994 Entrez gene
189207 Entrez gene
SwissProt Q22831 EMBL-EBI
O44853 EMBL-EBI
WormBase CE06518 Wormbase
CE14606 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB95014 Hypothetical protein W04H10.4 [Caenorhabditis elegans] ref|NP_493771.1| W04H10.4 [Caenorhabditis elegans] 1.0E-138
blast CAA93877 Hypothetical protein T27D12.3 [Caenorhabditis elegans] ref|NP_496528.1| T27D12.3 [Caenorhabditis elegans] 2.0E-84
blast CAA93877 Hypothetical protein T27D12.3 [Caenorhabditis elegans] ref|NP_496528.1| T27D12.3 [Caenorhabditis elegans] 1.0E-83
blast AAB95014 Hypothetical protein W04H10.4 [Caenorhabditis elegans] ref|NP_493771.1| W04H10.4 [Caenorhabditis elegans] 3.0E-80
blast AAB95014 Hypothetical protein W04H10.4 [Caenorhabditis elegans] ref|NP_493771.1| W04H10.4 [Caenorhabditis elegans] 1.0E-74
blast CAA93877 Hypothetical protein T27D12.3 [Caenorhabditis elegans] ref|NP_496528.1| T27D12.3 [Caenorhabditis elegans] 1.0E-71
blast AAB95014 Hypothetical protein W04H10.4 [Caenorhabditis elegans] ref|NP_493771.1| W04H10.4 [Caenorhabditis elegans] 1.0E-66
Sequence
Target Sequence 
>C. ELEGANS:184912_S_AT
aaatcgtaacgaagcaagtgcccgttgtgctacagagggagcagttctcagtggagttca
aaataaagcagaattgaacgctatgattaatggaattttgaccaatcgcttctatggacg
tttttcaggccaattcacaaggttgggtaacggttatttctgggttggtgcaatgagaaa
aacgtcatgtttaatgtcgcagctgacggcaacctgtactgcactgaattcttttgaatg
gacagatggctcaaccacgggtacagatggatttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCGTAACGAAGCAAGTGCCCGT 680 113 303 Antisense
TAACGAAGCAAGTGCCCGTTGTGCT 249 637 309 Antisense
AGAGGGAGCAGTTCTCAGTGGAGTT 267 69 336 Antisense
ACGGTTATTTCTGGGTTGGTGCAAT 18 97 452 Antisense
TTATTTCTGGGTTGGTGCAATGAGA 268 659 456 Antisense
AAACGTCATGTTTAATGTCGCAGCT 162 127 482 Antisense
CATGTTTAATGTCGCAGCTGACGGC 587 209 488 Antisense
TGTACTGCACTGAATTCTTTTGAAT 467 559 517 Antisense
CAGATGGCTCAACCACGGGTACAGA 596 205 545 Antisense
GGCTCAACCACGGGTACAGATGGAT 133 539 550 Antisense
CAACCACGGGTACAGATGGATTTAT 256 187 554 Antisense
Sequence Source Affymetrix Proprietary Database