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[184911_at]

Description W04H10.4 /REP_DB=WormBase Gene ID /WP=CE14606 /TR=O44853 /GB=AAB95014.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 5
(-3)
A 		6
(-2.9)
A 		5.1
(-3)
A 		55.2
(3)
M 		50
B 1.1
(-3)
A 		1.6
(-1.8)
A 		3.5
(3)
A 		2.7
(1)
A 		2
C 13.6
(-1)
A 		19.6
(0.3)
A 		3.8
(-3)
A 		32.5
(3)
A 		29
avr 6.6
(-2.4) 		9.1
(-1.8) 		4.1
(-3) 		30.1
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 3.2
(-0.8)
A 		5.1
(1)
A 		7.1
(3)
A 		1.9
(-2.1)
A 		1
(-3)
A 		1.3
(-2.7)
A 		6
B 1.7
(-1.9)
A 		5.7
(3)
A 		4.1
(1)
A 		3.2
(-0.1)
A 		0.8
(-3)
A 		1.2
(-2.5)
A 		5
C 1.3
(-2.9)
A 		2.1
(-2.6)
A 		3.1
(-2.3)
A 		21.5
(3)
A 		0.8
(-3)
A 		1.1
(-2.9)
A 		21
avr 2.1
(-2.1) 		4.3
(-0.5) 		4.8
(-0.1) 		8.9
(3) 		0.9
(-3) 		1.2
(-2.8) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.8
(-2.6)
A 		1.3
(-3)
A 		1.3
(-3)
A 		8.1
(3)
M 		7
B 0.3
(-3)
A 		0.4
(-1.8)
A 		0.8
(3)
A 		0.6
(0.6)
A 		1
C 4.5
(1.5)
A 		5.6
(3)
A 		1.3
(-3)
A 		5.5
(2.9)
A 		4
avr 2.2
(-1.2) 		2.4
(-0.8) 		1.1
(-3) 		4.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.6
(-1.8)
A 		1.8
(3)
A 		1.6
(2.2)
A 		0.5
(-2.2)
A 		0.3
(-3)
A 		0.3
(-3)
A 		2
B 0.6
(-1.9)
A 		1.9
(3)
A 		1
(-0.4)
A 		0.8
(-1.1)
A 		0.3
(-3)
A 		0.4
(-2.6)
A 		2
C 0.5
(-2.6)
A 		0.6
(-2.4)
A 		0.8
(-2.1)
A 		4.3
(3)
A 		0.2
(-3)
A 		0.4
(-2.7)
A 		4
avr 0.6
(-1.9) 		1.4
(1.1) 		1.1
(0) 		1.9
(3) 		0.3
(-3) 		0.4
(-2.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184911_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5790
Sequence Type Exemplar sequence
Representative Public ID W04H10.4 NCBI
Target Description W04H10.4 /REP_DB=WormBase Gene ID /WP=CE14606 /TR=O44853 /GB=AAB95014.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061370(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061370 NCBI Caenorhabditis elegans W04H10.4 (W04H10.4) mRNA, complete cds. 11/11 A 
W04H10.4 ENSEMBL cdna:known chromosome:CEL140:II:609775:611071:-1 gene:W04H10.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015254 5/11 Cross Hyb Matching Probes None
GENEFINDER00000015256 5/11 Cross Hyb Matching Probes None
GENEFINDER00000038213 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:609774-611071(-) 100.0 100.0
chrII:11831125-11832468(-) 95.18 95.18
Public Domain and Genome References
Gene Title
Ensembl W04H10.4
Entrez Gene 189207 Entrez gene
SwissProt O44853 EMBL-EBI
WormBase CE14606 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB95014 Hypothetical protein W04H10.4 [Caenorhabditis elegans] ref|NP_493771.1| W04H10.4 [Caenorhabditis elegans] 1.0E-138
blast CAA93877 Hypothetical protein T27D12.3 [Caenorhabditis elegans] ref|NP_496528.1| T27D12.3 [Caenorhabditis elegans] 6.0E-66
blast CAB04132 Hypothetical protein F16H6.2 [Caenorhabditis elegans] emb|CAB03936.1| Hypothetical protein F16H6.2 [Caenorhabditis elegans] ref|NP_507556.1| F16H6.2 [Caenorhabditis elegans] 4.0E-38
Sequence
Target Sequence 
>C. ELEGANS:184911_AT
atgcgtcgcagttttttttgttaatcatttggcaaaagtagaagtatctgcgagaacaga
aacggagtatgacagccatgctaataaaagatatacggtggtcccaatacaaaaatgtat
cgaaacattttttaagctatttgttggactatatttacaaggaaatcgtaacgaagcaag
tgcccgttgtgctacagagggagcagttctcagtggagttcaaaataaagcagaattgaa
cgctatgattaatggaattttgaccaatcgcttctatggacgtttttcaggccaattcac
aaggttgggtaacggttatttctgggttggtgcaatgagaaaaacgtcatgtttaatgtc
gcagctgacggcaacctgtactgcactgaattcttttgaatggacagatggctcaaccac
gggtacagatggatttatttggaaggccggagatccaaacaactaccaatataatctcta
tgacgaaccctgcgttgctgcagatgttaacctgatggaggatatagcatgcactagaac
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGTCGCAGTTTTTTTTGTTAAT 65 41 141 Antisense
GAAACGGAGTATGACAGCCATGCTA 603 355 199 Antisense
GATATACGGTGGTCCCAATACAAAA 187 425 230 Antisense
GGAATTTTGACCAATCGCTTCTATG 164 533 394 Antisense
TCGCTTCTATGGACGTTTTTCAGGC 203 589 408 Antisense
GTTTTTCAGGCCAATTCACAAGGTT 402 447 422 Antisense
TGACGGCAACCTGTACTGCACTGAA 264 571 506 Antisense
TATAATCTCTATGACGAACCCTGCG 245 661 610 Antisense
ACGAACCCTGCGTTGCTGCAGATGT 688 91 623 Antisense
GCGTTGCTGCAGATGTTAACCTGAT 662 289 632 Antisense
GGAGGATATAGCATGCACTAGAACT 639 515 657 Antisense
Sequence Source Affymetrix Proprietary Database