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[184905_at]

Description F48A11.4 /REP_DB=WormBase Gene ID /WP=CE10728 /TR=O17369 /GB=AAB71286.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_high_8_8 > 29      6grp_highest_nonorm > 91      6grp_total > 99      4grp_total > 34      6grp_highest_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 229.2
(3)
P 		127.9
(-3)
P 		223.2
(2.6)
P 		159.3
(-1.1)
A 		101
B 144.8
(-3)
P 		173.2
(3)
P 		160.4
(0.3)
P 		169.4
(2.2)
P 		28
C 130.8
(-3)
P 		278.8
(3)
P 		150.8
(-2.2)
P 		232
(1.1)
P 		148
avr 168.3
(-3) 		193.3
(3) 		178.1
(-0.6) 		186.9
(1.5) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 228.7
(-1.3)
P 		218.1
(-1.6)
P 		168.8
(-3)
P 		210
(-1.9)
P 		300.9
(0.7)
P 		385.9
(3)
P 		217
B 152.9
(-3)
P 		238.2
(2.7)
P 		199.3
(0.1)
P 		230
(2.1)
P 		243
(3)
P 		192.7
(-0.3)
P 		90
C 150.3
(-2.4)
P 		182.7
(-1.3)
P 		223.6
(0.1)
P 		131.3
(-3)
P 		308.3
(3)
P 		271.8
(1.8)
P 		177
avr 177.3
(-3) 		213
(-1) 		197.2
(-1.9) 		190.4
(-2.3) 		284.1
(3) 		283.5
(3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 83.5
(3)
P 		27.8
(-2.6)
P 		58.3
(0.5)
P 		23.3
(-3)
A 		60
B 46.2
(3)
P 		42.8
(1)
P 		37.2
(-2.3)
P 		36.1
(-3)
P 		10
C 43.3
(-2.4)
P 		80.2
(3)
P 		52.5
(-1)
P 		39.1
(-3)
P 		41
avr 57.7
(3) 		50.3
(1.2) 		49.3
(1) 		32.8
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 42.2
(-2.4)
P 		77.6
(1.3)
P 		36.8
(-3)
P 		53.3
(-1.3)
P 		90.8
(2.7)
P 		94
(3)
P 		57
B 53.2
(-2.4)
P 		79.3
(0.7)
P 		48.4
(-3)
P 		60.9
(-1.5)
P 		98.7
(3)
P 		71.8
(-0.2)
P 		50
C 55.7
(-0.6)
P 		55.7
(-0.6)
P 		56.9
(-0.5)
P 		26.4
(-3)
P 		99.8
(3)
P 		91
(2.3)
P 		73
avr 50.4
(-2.6) 		70.9
(-0.1) 		47.4
(-2.9) 		46.9
(-3) 		96.4
(3) 		85.6
(1.7) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184905_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4266
Sequence Type Exemplar sequence
Representative Public ID F48A11.4 NCBI
Target Description F48A11.4 /REP_DB=WormBase Gene ID /WP=CE10728 /TR=O17369 /GB=AAB71286.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061282(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061282 NCBI Caenorhabditis elegans F48A11.4 (F48A11.4) mRNA, complete cds. 11/11 None
SNAP00000036186 ENSEMBL cdna:SNAP chromosome:CEL140:II:208733:216785:-1 11/11 None
GENEFINDER00000036190 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:213412:216785:-1 11/11 None
F48A11.4 ENSEMBL cdna:known chromosome:CEL140:II:213191:216620:-1 gene:F48A11.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:214208-216785(-) 96.72 96.72
Public Domain and Genome References
Gene Title
Ensembl F48A11.4
Entrez Gene 185962 Entrez gene
SwissProt O17369 EMBL-EBI
WormBase CE32668 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71286 Hypothetical protein F48A11.4 [Caenorhabditis elegans] ref|NP_493683.2| F48A11.4 [Caenorhabditis elegans] 0.0
blast AAB71286 Hypothetical protein F48A11.4 [Caenorhabditis elegans] ref|NP_493683.2| F48A11.4 [Caenorhabditis elegans] 1.0E-159
blast CAE73857 Hypothetical protein CBG21441 [Caenorhabditis briggsae] 1.0E-104
blast CAE73857 Hypothetical protein CBG21441 [Caenorhabditis briggsae] 1.0E-98
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493683.2 1 359-381
F48A11.4 1 359-381
GENEFINDER00000036190 1 379-401
Sequence
Target Sequence 
>C. ELEGANS:184905_AT
gatttgacggatttggcgcgttggcatcttgcatggcttacggatccaaatgtttggatt
gattcggctacgattgatatggaattcgatcaaaagctgttggtggaaaagcgaaaattc
caaatcaaagagctgaatatatcggttcaagccaattatccaacagttcatggatggctt
cttcatatgtatcaagacgtcgaatcgctcatttttcggggaaacggaattctcgatgcg
aacaagtttctgcagttgccatttgccgcccgtctccgtaagctgctgatactgtacgaa
agctcatttgatgacagattactggtacaattgactgccgaacatctccagttggcatcg
gattttattaccgacgttggaattaatcgcctacttcatcgttggaacgatttcaactat
ccgattcgctcgtcgtttgtgatctacgttcagattaataattcggaagccgtcgtcaaa
tcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTGACGGATTTGGCGCGTTGGC 588 425 364 Antisense
CGTTGGCATCTTGCATGGCTTACGG 432 243 382 Antisense
AACAGTTCATGGATGGCTTCTTCAT 115 137 525 Antisense
GACGTCGAATCGCTCATTTTTCGGG 408 341 559 Antisense
AAGTTTCTGCAGTTGCCATTTGCCG 429 157 607 Antisense
CCGTCTCCGTAAGCTGCTGATACTG 478 265 633 Antisense
TACAATTGACTGCCGAACATCTCCA 85 643 689 Antisense
TAATCGCCTACTTCATCGTTGGAAC 109 635 747 Antisense
ATTTCAACTATCCGATTCGCTCGTC 31 17 773 Antisense
TTCGCTCGTCGTTTGTGATCTACGT 257 697 788 Antisense
ATTCGGAAGCCGTCGTCAAATCATT 488 7 824 Antisense
Sequence Source Affymetrix Proprietary Database