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[184904_at]

Description Y39C12A.2 /REP_DB=WormBase Gene ID /WP=CE21703 /TR=Q9U2L9 /GB=CAB60487.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 67      4grp_high_8_8 > 07      6grp_total > 68      4grp_total > 0      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 246
1 2 3 4 range
A 233
(-3)
P 		266.2
(-1.3)
A 		352.6
(3)
P 		235.1
(-2.9)
P 		120
B 420.7
(3)
P 		228
(-3)
P 		254.8
(-2.2)
P 		316.3
(-0.3)
A 		193
C 174.5
(-3)
P 		257.7
(-0.5)
P 		293.8
(0.6)
P 		374.7
(3)
P 		200
avr 276.1
(-0.4) 		250.6
(-3) 		300.4
(2.1) 		308.7
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 238.7
(0)
M 		151.6
(-3)
P 		237.1
(-0)
P 		278
(1.4)
P 		324.9
(3)
P 		313.1
(2.6)
P 		173
B 342.7
(3)
P 		289.5
(0.4)
P 		287.6
(0.3)
P 		221.9
(-2.8)
P 		218.5
(-3)
P 		309.6
(1.4)
P 		124
C 207.6
(-3)
P 		276.1
(-0.8)
P 		225.9
(-2.4)
P 		239.3
(-2)
P 		211.6
(-2.9)
P 		392.2
(3)
P 		185
avr 263
(-1.6) 		239.1
(-3) 		250.2
(-2.3) 		246.4
(-2.6) 		251.7
(-2.2) 		338.3
(3) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 84.8
(2.2)
P 		57.8
(-0.6)
A 		92.2
(3)
P 		34.4
(-3)
P 		58
B 134.1
(3)
P 		56.3
(-3)
P 		59
(-2.8)
P 		67.4
(-2.1)
A 		78
C 57.8
(-3)
P 		74.1
(-0.8)
P 		102.4
(3)
P 		63.2
(-2.3)
P 		45
avr 92.2
(3) 		62.7
(-1.8) 		84.5
(1.8) 		55
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 44
(-3)
M 		53.9
(-1.9)
P 		51.6
(-2.2)
P 		70.5
(-0.1)
P 		98
(3)
P 		76.2
(0.6)
P 		54
B 119.2
(3)
P 		96.4
(0.7)
P 		69.8
(-1.9)
P 		58.8
(-3)
P 		88.8
(-0)
P 		115.5
(2.6)
P 		60
C 76.9
(-0.9)
P 		84.3
(-0.4)
P 		57.5
(-2.3)
P 		48.1
(-3)
P 		68.5
(-1.5)
P 		131.3
(3)
P 		83
avr 80
(-0.4) 		78.2
(-0.6) 		59.6
(-2.9) 		59.1
(-3) 		85.1
(0.2) 		107.7
(3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184904_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8838
Sequence Type Exemplar sequence
Representative Public ID Y39C12A.2 NCBI
Target Description Y39C12A.2 /REP_DB=WormBase Gene ID /WP=CE21703 /TR=Q9U2L9 /GB=CAB60487.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y39C12A.2 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:12224310:12226918:-1 gene:Y39C12A.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024106 1/11 Cross Hyb Matching Probes None
SNAP00000024084 1/11 Cross Hyb Matching Probes None
SNAP00000002423 1/11 Cross Hyb Matching Probes None
GENEFINDER00000039911 1/11 Cross Hyb Matching Probes None
SNAP00000039907 3/11 Cross Hyb Matching Probes None
GENEFINDER00000035896 2/11 Cross Hyb Matching Probes None
SNAP00000035892 1/11 Cross Hyb Matching Probes None
SNAP00000004813 1/11 Cross Hyb Matching Probes None
SNAP00000019622 4/11 Cross Hyb Matching Probes None
GENEFINDER00000019632 8/11 Cross Hyb Matching Probes None
GENEFINDER00000026775 1/11 Cross Hyb Matching Probes None
Y75B12A.1 3/11 Cross Hyb Matching Probes B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12224315-12226924(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y39C12A.2
Sequence
Target Sequence 
>C. ELEGANS:184904_AT
ggcaaactccgctgatgatggcttcagcatgcggaaatattagcgttgttcgattgttgt
taggtagaggagcaaatcccagactttgcgataaagaaaaacgtcaagcaattcattacg
catcaagttgttgtcagaatgtgccaaacgatctggataattcttctcggtgctcttcca
tccgattgctcgcttccatgctacaattaaagaccggaaaattagcagcactcccatcca
aactccagagacgtctaaagtttatatggaatctctcaccggagttgctatttgccaagc
atctcaaattgtggctcgattcgatttttccgatgatgaaaatccgccaaacgctcaacg
ccggcattgagcctcaattggatgaaccggaaagcccgccgagaatgaacgacgttattg
attggaaaacttgggaaacggttggttttgttgataaaatattcgaaaaatcagctcgtc
ataatctcactttaaaccgtcatcgtcaagtagccgcgacagttgcatcgaaatcgtctc
taattcatcacactggatatctggagatggatgcaatcccaatttgtgatctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAAACTCCGCTGATGATGGCTTC 181 535 245 Antisense
AGCGTTGTTCGATTGTTGTTAGGTA 314 75 286 Antisense
GATCTGGATAATTCTTCTCGGTGCT 271 419 394 Antisense
GGAAAATTAGCAGCACTCCCATCCA 610 527 460 Antisense
GGAATCTCTCACCGGAGTTGCTATT 478 533 512 Antisense
GATGAAAATCCGCCAAACGCTCAAC 341 411 579 Antisense
AACGCTCAACGCCGGCATTGAGCCT 644 145 594 Antisense
TTGGATGAACCGGAAAGCCCGCCGA 273 695 622 Antisense
AAATCAGCTCGTCATAATCTCACTT 60 117 712 Antisense
ATCGTCTCTAATTCATCACACTGGA 652 35 777 Antisense
GGATGCAATCCCAATTTGTGATCTC 2 515 813 Antisense
Sequence Source Affymetrix Proprietary Database