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[184903_at]

Description E04F6.12 /REP_DB=WormBase Gene ID /WP=CE01213 /TR=Q19066 /GB=AAA68366.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 5.1
(-2.9)
A 		11.6
(-2.3)
A 		4
(-3)
A 		65.6
(3)
A 		62
B 30.9
(3)
A 		2.2
(-3)
A 		4
(-2.6)
A 		13.7
(-0.6)
A 		29
C 6.9
(-2.9)
A 		6
(-3)
A 		7.4
(-2.8)
A 		46.6
(3)
A 		41
avr 14.3
(-1.5) 		6.6
(-2.8) 		5.1
(-3) 		42
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 7.4
(0.5)
A 		0.7
(-3)
A 		11.8
(2.7)
A 		5.2
(-0.7)
A 		1.4
(-2.6)
A 		12.3
(3)
A 		12
B 27.5
(3)
A 		2.2
(-2.7)
A 		0.9
(-3)
A 		4.9
(-2.1)
A 		4.1
(-2.3)
A 		0.8
(-3)
A 		27
C 3.2
(-2.7)
A 		12
(-0.8)
A 		29.3
(3)
A 		17.6
(0.4)
A 		5.1
(-2.3)
A 		1.8
(-3)
A 		28
avr 12.7
(2.3) 		5
(-2.1) 		14
(3) 		9.2
(0.3) 		3.5
(-3) 		5
(-2.1) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.9
(-2.4)
A 		2.5
(-2)
A 		1
(-3)
A 		9.6
(3)
A 		9
B 9.8
(3)
A 		0.6
(-3)
A 		0.9
(-2.8)
A 		2.9
(-1.5)
A 		9
C 2.3
(-2.4)
A 		1.7
(-3)
A 		2.6
(-2.1)
A 		7.9
(3)
A 		6
avr 4.7
(0.6) 		1.6
(-2.9) 		1.5
(-3) 		6.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.4
(-0.4)
A 		0.2
(-3)
A 		2.6
(2.1)
A 		1.3
(-0.6)
A 		0.4
(-2.6)
A 		3
(3)
A 		3
B 9.6
(3)
A 		0.7
(-2.7)
A 		0.2
(-3)
A 		1.3
(-2.3)
A 		1.7
(-2)
A 		0.3
(-2.9)
A 		9
C 1.2
(-2.5)
A 		3.7
(-0.3)
A 		7.5
(3)
A 		3.5
(-0.5)
A 		1.6
(-2.1)
A 		0.6
(-3)
A 		7
avr 4.1
(3) 		1.5
(-2.4) 		3.4
(1.6) 		2
(-1.3) 		1.2
(-3) 		1.3
(-2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184903_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5929
Sequence Type Exemplar sequence
Representative Public ID E04F6.12 NCBI
Target Description E04F6.12 /REP_DB=WormBase Gene ID /WP=CE01213 /TR=Q19066 /GB=AAA68366.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063104(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063104 NCBI Caenorhabditis elegans E04F6.12 (E04F6.12) mRNA, complete cds. 11/11 None
E04F6.12 ENSEMBL cdna:known chromosome:CEL140:II:7217007:7217409:1 gene:E04F6.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7217002-7217405(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E04F6.12
Entrez Gene 184040 Entrez gene
SwissProt Q19066 EMBL-EBI
WormBase CE01213 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68366 Hypothetical protein E04F6.12 [Caenorhabditis elegans] ref|NP_495505.1| E04F6.12 [Caenorhabditis elegans] 3.0E-51
Sequence
Target Sequence 
>C. ELEGANS:184903_AT
gatggactcagatggaaagaaccgaaaaataagtgagcaggatggcgggaagggagccgg
cggagcacaacgtggcgtgaaagagcaaaagccccgcccagtttttgtgttgctctttgg
agacgcggtagagacggcggaacgtgttagagagaagagcagaagagaaaaaggacaaca
agttgttgttatattaacagttgctttatactatccaagaaagcttaaggattctgttga
aatcttttttggagacaaaatacttcagaactttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGACTCAGATGGAAAGAACCGA 535 403 18 Antisense
GCAGGATGGCGGGAAGGGAGCCGGC 72 311 54 Antisense
GGCGGAGCACAACGTGGCGTGAAAG 577 539 76 Antisense
GCGTGAAAGAGCAAAAGCCCCGCCC 207 291 92 Antisense
GCCCAGTTTTTGTGTTGCTCTTTGG 412 287 113 Antisense
TGTTGCTCTTTGGAGACGCGGTAGA 603 559 125 Antisense
GACGCGGTAGAGACGGCGGAACGTG 287 381 139 Antisense
GAGACGGCGGAACGTGTTAGAGAGA 435 393 148 Antisense
AACAGTTGCTTTATACTATCCAAGA 211 137 213 Antisense
GAAAGCTTAAGGATTCTGTTGAAAT 268 357 236 Antisense
GGAGACAAAATACTTCAGAACTTTC 599 519 268 Antisense
Sequence Source Affymetrix Proprietary Database