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[184902_at]

Description R07C3.11 /REP_DB=WormBase Gene ID /WP=CE12542 /TR=O16765 /GB=AAB66240.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 11      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 14.3
(-1.9)
A 		19.6
(-1.1)
A 		6.9
(-3)
A 		47.7
(3)
A 		41
B 16.7
(0.7)
A 		24.4
(3)
A 		6.9
(-2.3)
A 		4.6
(-3)
A 		20
C 14.9
(-1.5)
A 		3.7
(-3)
A 		12.5
(-1.9)
A 		49.7
(3)
A 		46
avr 15.3
(-1.5) 		15.9
(-1.3) 		8.8
(-3) 		34
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 6.7
(-2.3)
A 		2.1
(-3)
A 		3.6
(-2.8)
A 		26.2
(0.8)
A 		10.3
(-1.7)
A 		40.3
(3)
A 		38
B 43.3
(-0)
A 		2.6
(-3)
A 		28.9
(-1.1)
A 		32.7
(-0.8)
A 		10.7
(-2.4)
A 		85.1
(3)
P 		83
C 4.8
(-3)
A 		19.5
(-1.8)
A 		15.8
(-2.1)
A 		58.1
(1.5)
A 		40
(-0)
A 		75.8
(3)
P 		71
avr 18.3
(-2) 		8.1
(-3) 		16.1
(-2.2) 		39
(0.1) 		20.3
(-1.8) 		67.1
(3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 5.2
(0.9)
A 		4.3
(-0.1)
A 		1.8
(-3)
A 		7
(3)
A 		5
B 5.3
(2.2)
A 		6
(3)
A 		1.6
(-2.3)
A 		1
(-3)
A 		5
C 4.9
(0.1)
A 		1.1
(-3)
A 		4.4
(-0.3)
A 		8.4
(3)
A 		7
avr 5.1
(2.2) 		3.8
(-0.5) 		2.6
(-3) 		5.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 1.2
(-2.7)
A 		0.8
(-3)
A 		0.8
(-3)
A 		6.6
(0.9)
A 		3.1
(-1.5)
A 		9.8
(3)
A 		9
B 15.1
(-0.2)
A 		0.9
(-3)
A 		7
(-1.8)
A 		8.7
(-1.5)
A 		4.4
(-2.3)
A 		31.7
(3)
P 		31
C 1.8
(-3)
A 		6
(-1.9)
A 		4
(-2.4)
A 		11.7
(-0.5)
A 		12.9
(-0.2)
A 		25.4
(3)
P 		24
avr 6
(-2) 		2.6
(-3) 		3.9
(-2.6) 		9
(-1.1) 		6.8
(-1.7) 		22.3
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184902_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4308
Sequence Type Exemplar sequence
Representative Public ID R07C3.11 NCBI
Target Description R07C3.11 /REP_DB=WormBase Gene ID /WP=CE12542 /TR=O16765 /GB=AAB66240.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061445(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061445 NCBI Caenorhabditis elegans R07C3.11 (R07C3.11) mRNA, complete cds. 11/11 None
SNAP00000022232 ENSEMBL cdna:SNAP chromosome:CEL140:II:907541:909637:-1 11/11 None
GENEFINDER00000022248 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:907541:909637:-1 11/11 None
R07C3.11 ENSEMBL cdna:known chromosome:CEL140:II:907541:908787:-1 gene:R07C3.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:907539-908786(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07C3.11
Entrez Gene 187670 Entrez gene
SwissProt O16765 EMBL-EBI
WormBase CE12542 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66240 Hypothetical protein R07C3.11 [Caenorhabditis elegans] ref|NP_493846.1| R07C3.11 [Caenorhabditis elegans] 0.0
blast AAB66237 Hypothetical protein R07C3.7 [Caenorhabditis elegans] ref|NP_493850.1| R07C3.7 [Caenorhabditis elegans] 3.0E-41
blast AAC67485 Hypothetical protein F58E1.12 [Caenorhabditis elegans] ref|NP_494045.1| F58E1.12 [Caenorhabditis elegans] 4.0E-40
blast AAC67488 Hypothetical protein F58E1.11 [Caenorhabditis elegans] ref|NP_494044.2| F58E1.11 [Caenorhabditis elegans] 4.0E-38
blast AAB66237 Hypothetical protein R07C3.7 [Caenorhabditis elegans] ref|NP_493850.1| R07C3.7 [Caenorhabditis elegans] 8.0E-37
Sequence
Target Sequence 
>C. ELEGANS:184902_AT
gaagccttctggagaaactattcgttggaagacccacaatttgtgtgaagagcttgttca
ttgattcttgttttatagtttgtattcccaagaatatgcagttcaaagttaaacatttaa
gtctcagttgcaataattttgacgaagatctcaacgcgattcgtcctctacttcacgttt
caagcttcccactggaatctatcgaagtctatggaaaatgggattctcttgaccctattc
ttaaaacttgtggagttttatattttcccggtggttgtaagatagaaaagttgttaaaac
ttcaaaatttccatcgaaaagttcatgttaatatcttcgacgcattgaagcaacttcctc
caagtgtaaagagttggctcgaaaataggcaagagattggtacggagtacacatttgaca
tcagtaacgaggatcaaataattttatttttggatgagatgaaggagtccaatgcggata
gaattgtcgatgaagctgaacttcatgtcaaacttcggatggacaattccacggagcttt
acatcagttatgaccctgcaagagacaatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCTTCTGGAGAAACTATTCGT 223 345 608 Antisense
CGAAGATCTCAACGCGATTCGTCCT 242 253 750 Antisense
ACGTTTCAAGCTTCCCACTGGAATC 163 93 782 Antisense
GATTCTCTTGACCCTATTCTTAAAA 613 431 829 Antisense
TATATTTTCCCGGTGGTTGTAAGAT 372 661 866 Antisense
AGTTCATGTTAATATCTTCGACGCA 60 63 927 Antisense
GACGCATTGAAGCAACTTCCTCCAA 161 381 946 Antisense
GGTACGGAGTACACATTTGACATCA 367 483 1006 Antisense
GCTGAACTTCATGTCAAACTTCGGA 378 295 1102 Antisense
ATTCCACGGAGCTTTACATCAGTTA 319 7 1133 Antisense
GTTATGACCCTGCAAGAGACAATGT 463 447 1154 Antisense
Sequence Source Affymetrix Proprietary Database