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[184901_at]

Description T24E12.2 /REP_DB=WormBase Gene ID /WP=CE17260 /TR=O44884 /GB=AAB95040.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 3.4
(-3)
A 		4.9
(1.3)
A 		5.5
(3)
A 		4.7
(0.7)
A 		2
B 3.3
(-3)
A 		17.9
(3)
A 		3.8
(-2.8)
A 		5.8
(-2)
A 		15
C 9.7
(0.8)
A 		2.8
(-3)
A 		9.3
(0.6)
A 		13.7
(3)
A 		11
avr 5.5
(-3) 		8.5
(3) 		6.2
(-1.6) 		8.1
(2.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 4.6
(-1.9)
A 		6.8
(-0.1)
A 		10.6
(3)
A 		3.2
(-3)
A 		3.9
(-2.4)
A 		4.6
(-1.9)
A 		7
B 7.3
(3)
A 		2.6
(-2.4)
A 		3.3
(-1.6)
A 		4.4
(-0.3)
A 		2.1
(-3)
A 		3.1
(-1.8)
A 		5
C 3.9
(-3)
A 		6.8
(0.9)
A 		4.2
(-2.6)
A 		8.4
(3)
A 		4.7
(-1.9)
A 		4.2
(-2.6)
A 		5
avr 5.3
(1.3) 		5.4
(1.5) 		6
(3) 		5.3
(1.3) 		3.6
(-3) 		4
(-2) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.2
(1.3)
A 		1.1
(0.4)
A 		1.4
(3)
A 		0.7
(-3)
A 		1
B 1
(-2.8)
A 		4.4
(3)
A 		0.9
(-3)
A 		1.2
(-2.5)
A 		4
C 3.2
(3)
A 		0.8
(-3)
A 		3.2
(3)
A 		2.3
(0.7)
A 		2
avr 1.8
(0.4) 		2.1
(3) 		1.8
(0.4) 		1.4
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.9
(-2.6)
A 		2.4
(3)
A 		2.3
(2.6)
A 		0.8
(-3)
A 		1.2
(-1.5)
A 		1.1
(-1.9)
A 		2
B 2.5
(3)
A 		0.9
(-2.6)
A 		0.8
(-3)
A 		1.2
(-1.6)
A 		0.9
(-2.6)
A 		1.1
(-1.9)
A 		2
C 1.4
(-1.2)
A 		2.1
(3)
A 		1.1
(-3)
A 		1.7
(0.6)
A 		1.5
(-0.6)
A 		1.4
(-1.2)
A 		1
avr 1.6
(1) 		1.8
(3) 		1.4
(-1) 		1.2
(-3) 		1.2
(-3) 		1.2
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184901_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5938
Sequence Type Exemplar sequence
Representative Public ID T24E12.2 NCBI
Target Description T24E12.2 /REP_DB=WormBase Gene ID /WP=CE17260 /TR=O44884 /GB=AAB95040.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062248(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062248 NCBI Caenorhabditis elegans T24E12.2 (T24E12.2) mRNA, complete cds. 11/11 None
GENEFINDER00000005589 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3782956:3784150:1 11/11 None
T24E12.2 ENSEMBL cdna:known chromosome:CEL140:II:3782944:3784150:1 gene:T24E12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005577 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3782942-3784149(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24E12.2
Entrez Gene 188861 Entrez gene
SwissProt O44884 EMBL-EBI
WormBase CE17260 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95040 Hypothetical protein T24E12.2 [Caenorhabditis elegans] ref|NP_494649.1| T24E12.2 [Caenorhabditis elegans] 1.0E-128
blast AAB95040 Hypothetical protein T24E12.2 [Caenorhabditis elegans] ref|NP_494649.1| T24E12.2 [Caenorhabditis elegans] 1.0E-125
blast AAK18994 Hypothetical protein Y8A9A.3 [Caenorhabditis elegans] ref|NP_494652.1| Y8A9A.3 [Caenorhabditis elegans] 1.0E-10
blast CAE63403 Hypothetical protein CBG07842 [Caenorhabditis briggsae] 7.0E-9
blast CAE63403 Hypothetical protein CBG07842 [Caenorhabditis briggsae] 8.0E-9
Sequence
Target Sequence 
>C. ELEGANS:184901_AT
gaaatcaaccggcttcgtgagagtaacacccacgcaaataaagccctccgcctcgaaaat
tcaaacttgcgagaccacgtgctccagctaacgaatgattgccaaattttcttaaataaa
tgctccaatctagagcaggagttggctagagtccagcaaggagtccccgttcaagaaagc
cccaacccaatttttgaaaatgcacttcaaatttggcagcataacttcgagaattttcat
agaggagttgattaccaatgggctttagatctgaccgagttcctgtttgacccaaatggc
aaaaaagtagtcccccagatcaaaatgtttgtaaggaatcaaagtagtttgtatggaaac
cagagatccactaagagttacaacctgccttggccaaaaattcgttcggaagataaagaa
gactgggcgaaagtttggagacagttgaaggatattcaggcgcatcaggtccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCAACCGGCTTCGTGAGAGTA 309 357 187 Antisense
TAACACCCACGCAAATAAAGCCCTC 396 639 210 Antisense
ATTCAAACTTGCGAGACCACGTGCT 265 11 245 Antisense
ACCACGTGCTCCAGCTAACGAATGA 373 85 260 Antisense
GGCTAGAGTCCAGCAAGGAGTCCCC 182 537 330 Antisense
GCTTTAGATCTGACCGAGTTCCTGT 173 305 448 Antisense
GAGTTCCTGTTTGACCCAAATGGCA 470 397 463 Antisense
AAGTAGTCCCCCAGATCAAAATGTT 27 105 491 Antisense
CTAAGAGTTACAACCTGCCTTGGCC 260 227 557 Antisense
TGCCTTGGCCAAAAATTCGTTCGGA 654 571 572 Antisense
GGATATTCAGGCGCATCAGGTCCAG 71 511 636 Antisense
Sequence Source Affymetrix Proprietary Database